1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtgagtatgattcttagctcgtacttttaccaagtgcattatgtatgggtcgtgcaacgaggtaactttattcttttcgctttgaatgacctttgattaatctcggagccttgtgtgcagCCTGTAATACTCGACTACCTGGCAAGTAAAATGATATCATCAAACGACTTGGTAGTGGTGTCACCAGATGTTGGGGGAGTAGCTCGTGCCCGTGCATTTG
species | Physcomitrella patens |
transcript | PP1S42_193V6.4 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CAGTNCA-TGGGATATTTTGACATTTCCGTTGATNCACGTT-ATGGGCAG CCTGTAATACTCGACTACCTGGCAAGTAAAATGATATCATCAAACGACTTGEST: gi|100356373|gb|BY946332.1|BY946332
genomic: CAGT-CAATGGGATATTTTGACATTTCCGTTGAT-CACGTTTATGGTCAGgtgagtatga ... ttgtgtgcagCCTGTAATACTCGACTACCTGGCAAGTAAAATGATATCATCAAACGACTTG
EST: GGCAGTCAATGGGATATTTTGACATTTCCGTTGATCACGTTTATGGTCAG CCTGTAAAACTCGACTACCTGGCAAGTAAA-TGATATCATCAAACGACTTGEST: gi|100399937|gb|BY990696.1|BY990696
genomic: GGCAGTCAATGGGATATTTTGACATTTCCGTTGATCACGTTTATGGTCAGgtgagtatga ... ttgtgtgcagCCTGTAATACTCGACTACCTGGCAAGTAAAATGATATCATCAAACGACTTG
EST: GGCAGTCAATGGGATATTTTGACATTTCCGTTGATCACGTTTATGGTCAG CCTGTAATACTCGACTACCTGGCAAGTAAAATGATATCATCAAACGACTTGEST: gi|162261958|gb|FC436817.1|FC436817
genomic: GGCAGTCAATGGGATATTTTGACATTTCCGTTGATCACGTTTATGGTCAGgtgagtatga ... ttgtgtgcagCCTGTAATACTCGACTACCTGGCAAGTAAAATGATATCATCAAACGACTTG
EST: GGCAGTCAATGGGATATTTTGACATTTCCGTTGATCACGTTTATGGTCAG CCTGTAATACTCGACTACCTGGCAAGTANAATGATATCATCAAACGACTTGEST: gi|100353033|gb|BY945573.1|BY945573
genomic: GGCAGTCAATGGGATATTTTGACATTTCCGTTGATCACGTTTATGGTCAGgtgagtatga ... ttgtgtgcagCCTGTAATACTCGACTACCTGGCAAGTAAAATGATATCATCAAACGACTTG
EST: GGCAGTCAATGGGATATTTTGACATTTCCGTTGATCACGTTTATGGTCAG CCTGTAATACTCGACTACCTGGCA-GTAAAATGATATCATCAAACGACTTEST: gi|208380333|gb|DC907658.1|DC907658
genomic: GGCAGTCAATGGGATATTTTGACATTTCCGTTGATCACGTTTATGGTCAGgtgagtatga ... ttgtgtgcagCCTGTAATACTCGACTACCTGGCAAGTAAAATGATATCATCAAACGACTT
EST: GGCAGTCAATGGGATATTTTGACATTTCCGTTGATCACGTTTATGGTCAG CCTGTAATACTCGACTACCTGGCAAGTAAAATGATATCATCAACCGACTNGEST: gi|100372888|gb|BY948750.1|BY948750
genomic: GGCAGTCAATGGGATATTTTGACATTTCCGTTGATCACGTTTATGGTCAGgtgagtatga ... ttgtgtgcagCCTGTAATACTCGACTACCTGGCAAGTAAAATGATATCATCAAACGACTTG
EST: GCAGTCAATGGGATATTTTGACATTTCCCGT-GATCACGTTTATGGTCAG CCTGGTA-TACTCGACTACCCTGGCA-GTAAA-TGATATCATCAAACGACTEST: gi|100353317|gb|BY964745.1|BY964745
genomic: GCAGTCAATGGGATATTTTGACATTTCC-GTTGATCACGTTTATGGTCAGgtgagtatga ... ttgtgtgcagCCTG-TAATACTCGACTACC-TGGCAAGTAAAATGATATCATCAAACGACT
EST: GGCAGTCAATGGGATATTTTGACATTTCCGTTGATCACGTTTATGGTCAG CCTGTAATACTCGACTACCTGGCAAGTAAAATGATATCATCEST: gi|162258694|gb|FC434389.1|FC434389
genomic: GGCAGTCAATGGGATATTTTGACATTTCCGTTGATCACGTTTATGGTCAGgtgagtatga ... ttgtgtgcagCCTGTAATACTCGACTACCTGGCAAGTAAAATGATATCATC
EST: GGCAGTCAATGGGATATTTTGACATTTCCGTTGATCACGTTTATGGTCAG CCTGTAATACTCGACTACCTGGCAAGTAAAATGATATCATCAAACGACTTG
genomic: GGCAGTCAATGGGATATTTTGACATTTCCGTTGATCACGTTTATGGTCAGgtgagtatga ... ttgtgtgcagCCTGTAATACTCGACTACCTGGCAAGTAAAATGATATCATCAAACGACTTG
ctttattcttttcgctttgaatgacctttgattaatctcggagccttgtgtgcagCCTGTAATACTCGACTACCTGGCAAGTAAAATGATATCATCAAACGACTTGGTAGTGGTGTCACCAGATGTTGGGGGAGTAGCTCGTGCCCGTGCATTTG
gattaat putative branch site (score: 25)
tttgattaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtatgattcttagctcgtacttttaccaagtgcattatgtatgggtcgtgcaacgaggtaactttattcttttcgctttgaatgacctttgattaatctcggagccttgtgtgcagCCTGTAATACTCGACTACCTGGCAAGTAAAATGATATCATCAAACGACTTGGTAGTGGTGTCACCAGATGTTGGGGGAGTAGCTCGTGCCCGTGCATTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG