1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...cgcaaggtggacagctcccttgtgacgatggctatagttaatacgagcctgtttcattactctccactaatgcaacaaatcgctttgctaaacgttgcagGCGGCAGTAGATCTGAACGGCGTGACAGTGGTGATTCTCATGAACCGGAAGGGAACAGAGGCACGGCGACCCATGAAGCAGAGGTGCAGAGCGCACGCAC
species | Physcomitrella patens |
transcript | PP1S42_157V6.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GAGGCGCCACCCACATCTCCCTCAA-CCTTCGACATGGCAAGAGTATTAA GCGGCAGTAGATCTGAACGGCGTGACAGTGGTGATTCTCATGAACEST: gi|37825466|gb|BJ583532.1|BJ583532
genomic: GAGGCGCCACCCACATCTCC-TCAAACCTTCGACATGGCAAGAGTATTAAgtgagtcgaa ... aacgttgcagGCGGCAGTAGATCTGAACGGCGTGACAGTGGTGATTCTCATGAAC
EST: CTTCGACATGGCAAGAGTATTAA GCGGCAGTAGATCTGAACGGCGTGACAGTGGTGATTCTCATGAACCGGAAGEST: gi|6167407|gb|AW145671.1|AW145671
genomic: CTTCGACATGGCAAGAGTATTAAgtgagtcgaa ... aacgttgcagGCGGCAGTAGATCTGAACGGCGTGACAGTGGTGATTCTCATGAACCGGAAG
EST: TCAAACCTTCGACATGGCAAGAGTATTAA GCGGCAGTAGATCTGAACGGCGTGACAGTGGTGATTCTCATGAACCGGAAG
genomic: TCAAACCTTCGACATGGCAAGAGTATTAAgtgagtcgaa ... aacgttgcagGCGGCAGTAGATCTGAACGGCGTGACAGTGGTGATTCTCATGAACCGGAAG
agcctgtttcattactctccactaatgcaacaaatcgctttgctaaacgttgcagGCGGCAGTAGATCTGAACGGCGTGACAGTGGTGATTCTCATGAACCGGAAGGGAACAGAGGCACGGCGACCCATGAAGCAGAGGTGCAGAGCGCACGCAC
tgctaaa putative branch site (score: 10)
tttcatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cgcaaggtggacagctcccttgtgacgatggctatagttaatacgagcctgtttcattactctccactaatgcaacaaatcgctttgctaaacgttgcagGCGGCAGTAGATCTGAACGGCGTGACAGTGGTGATTCTCATGAACCGGAAGGGAACAGAGGCACGGCGACCCATGAAGCAGAGGTGCAGAGCGCACGCAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC