1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtatcctttttagtcataattcttctattttatttacgcttgttttcttttcttttttttcttaatacagccgaaatttacatgttcacgtcctagttgaaatttgtcgacgttgccagtttgtctcgtgtggatctggtgtagtgatacgatttaaggagttggacttgaccgtatataatcccgatgaagGAATCAGCGATTGGACTTCCAGACCTCGAAGCCACCTTCGATGAAATTGCTGAAGCTTTTGTGTTTTTCGACCGCAATAAAGACGGCTATGTCAGCAAGA
species | Physcomitrella patens |
transcript | PP1S429_31V6.3 |
intron # | 4 |
splice site | 3' |
intron type | U12 (go to U12 genes for details) |
EST: TTGTACTAGCGCTTATCTACCTTCTAGGCAGACCTACTCACACAGGAGTT GAATCAGCGATTGGACTTCCAGACCTCGAAGCCACCTTCGATGAAATTGCTEST: gi|100417874|gb|BY993227.1|BY993227
genomic: TTGTACTAGCGCTTATCTACCTTCTAGGCAGACCTACTCACACAGGAGTTgtatcctttt ... cccgatgaagGAATCAGCGATTGGACTTCCAGACCTCGAAGCCACCTTCGATGAAATTGCT
EST: TTGTACTAGCGCTTATCTACCTTCTAGGCAGACCTACTCACACAGGAGTT GAATCAGCGATTGGACTTCCAGACCTCGAAGCCACCTTCGATGAAATTGCTEST: gi|100384207|gb|BY969338.1|BY969338
genomic: TTGTACTAGCGCTTATCTACCTTCTAGGCAGACCTACTCACACAGGAGTTgtatcctttt ... cccgatgaagGAATCAGCGATTGGACTTCCAGACCTCGAAGCCACCTTCGATGAAATTGCT
EST: TTGTACTAGCGCTTATCTACCTTCTAGGCAGACCTACTCACACAGGAGTT GAATCAGCGATTGGACTTCCAGACCTCGAAGCCACCTTCGATGAAATTGCT
genomic: TTGTACTAGCGCTTATCTACCTTCTAGGCAGACCTACTCACACAGGAGTTgtatcctttt ... cccgatgaagGAATCAGCGATTGGACTTCCAGACCTCGAAGCCACCTTCGATGAAATTGCT
ggtgtagtgatacgatttaaggagttggacttgaccgtatataatcccgatgaagGAATCAGCGATTGGACTTCCAGACCTCGAAGCCACCTTCGATGAAATTGCTGAAGCTTTTGTGTTTTTCGACCGCAATAAAGACGGCTATGTCAGCAAGA
ggacttgac putative branch site
tatataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatcctttttagtcataattcttctattttatttacgcttgttttcttttcttttttttcttaatacagccgaaatttacatgttcacgtcctagttgaaatttgtcgacgttgccagtttgtctcgtgtggatctggtgtagtgatacgatttaaggagttggacttgaccgtatataatcccgatgaagGAATCAGCGATTGGACTTCCAGACCTCGAAGCCACCTTCGATGAAATTGCTGAAGCTTTTGTGTTTTTCGACCGCAATAAAGACGGCTATGTCAGCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA