1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...gtggatgcatagtccgattgaatgtattgcagtatttatacaactctataactgtagagattgaaattattttggagtctaagagagatgattcgcgcagTGTATACTCAGGTACAGTGGCAGGAGCACGTGAAGCATTTATCAACGGTGTACCCGCGATTGCACTTTCTCTAGACTG
species | Physcomitrella patens |
transcript | PP1S425_16V6.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GTGGTCAGTGGTATCAACAAAGGCTCCAACTGTGGTTACCACAT TGTATACTCAGGTACAGTGGCAGGAGCACGTGAAGCATTTATCANCGGTGTEST: gi|162186160|gb|FC361364.1|FC361364
genomic: GTGGTCAGTGGTATCAACAAAGGCTCCAACTGTGGTTACCACATgtatgccctt ... attcgcgcagTGTATACTCAGGTACAGTGGCAGGAGCACGTGAAGCATTTATCAACGGTGT
EST: GTGGTCAGTGGTATCAACAAAGGCTCCAACTGTGGTTACCACAT TGTATACTCAGGTACAGTGGCAGGAGCACGTGAAGCATTEST: gi|100442509|gb|BY963203.1|BY963203
genomic: GTGGTCAGTGGTATCAACAAAGGCTCCAACTGTGGTTACCACATgtatgccctt ... attcgcgcagTGTATACTCAGGTACAGTGGCAGGAGCACGTGAAGCATT
EST: GTGGTCAGTGGTATCAACAAAGGCTCCAACTGTGGTTACCACAT TGTATACTCAGGTACAGTGGCAGGAGCACGTGAAGCATTTTATCA-CGGTGEST: gi|162265882|gb|FC442885.1|FC442885
genomic: GTGGTCAGTGGTATCAACAAAGGCTCCAACTGTGGTTACCACATgtatgccctt ... attcgcgcagTGTATACTCAGGTACAGTGGCAGGAGCACGTGAAGCATTT-ATCAACGGTG
EST: GTGGTCAGTGGTATCAACAAAGGCTCCAACTGTGGTTACCACAT TGTATACTCAGGTACAGTGGCAGGAGCACGTGAAGCATTTATCAACGGTGT
genomic: GTGGTCAGTGGTATCAACAAAGGCTCCAACTGTGGTTACCACATgtatgccctt ... attcgcgcagTGTATACTCAGGTACAGTGGCAGGAGCACGTGAAGCATTTATCAACGGTGT
ctataactgtagagattgaaattattttggagtctaagagagatgattcgcgcagTGTATACTCAGGTACAGTGGCAGGAGCACGTGAAGCATTTATCAACGGTGTACCCGCGATTGCACTTTCTCTAGACTG
ctataac putative branch site (score: 10)
agattgaaattatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtggatgcatagtccgattgaatgtattgcagtatttatacaactctataactgtagagattgaaattattttggagtctaagagagatgattcgcgcagTGTATACTCAGGTACAGTGGCAGGAGCACGTGAAGCATTTATCAACGGTGTACCCGCGATTGCACTTTCTCTAGACTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC