1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gttagttccattccaatctcaagtttctcagtcttcttcttcttcttcttctccttcttctagcttactctctgcacaccgcatgttttctgacgcccatttcattttatttgtttattttattttatcatggtacattagattggctcattgctacgatttgattgatttctgaccctgttggcgtagGATGTACTGTTTGTGGACTGTGACGATCAATGGAGCCCAGAGCCCGAAGTCGCAAAGCGAGTGCGAGGAATGCTCGCGGAAGCGCACCGTGTGTTGAACC
species | Physcomitrella patens |
transcript | PP1S41_202V6.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGCCTTTCGACGACGAGAGCTTCGATGTCGTCATTGAGAAAGGCGCCATG GATGTACTGTTTGTGGACTGTGACGATCAATGGAGCCCAGAGCCCGAAGTCEST: gi|100438774|gb|BY961796.1|BY961796
genomic: TGCCTTTCGACGACGAGAGCTTCGATGTCGTCATTGAGAAAGGCGCCATGgttagttcca ... gttggcgtagGATGTACTGTTTGTGGACTGTGACGATCAATGGAGCCCAGAGCCCGAAGTC
EST: TGCCTTTCGACGACGAGAGCTTCGATGTCGTCATTGAGAAAGGCGCCATG GATGTACTGTTTGTGGACTGTGACGATCAATGGAGCCCAGAGCCCGAAGTCEST: gi|162180625|gb|FC356982.1|FC356982
genomic: TGCCTTTCGACGACGAGAGCTTCGATGTCGTCATTGAGAAAGGCGCCATGgttagttcca ... gttggcgtagGATGTACTGTTTGTGGACTGTGACGATCAATGGAGCCCAGAGCCCGAAGTC
EST: TGCCTTTCGACGACGAGAGCTTCGATGTCGTCATTGAGAAAGGCGCCATG GATGTACTGTTTGTGGACTGTGACGATCAATGGAGCCCAGAGCCCGAAGTCEST: gi|100436243|gb|BY979451.1|BY979451
genomic: TGCCTTTCGACGACGAGAGCTTCGATGTCGTCATTGAGAAAGGCGCCATGgttagttcca ... gttggcgtagGATGTACTGTTTGTGGACTGTGACGATCAATGGAGCCCAGAGCCCGAAGTC
EST: TGCCTTTCGACGACGAGAGCTTCGATGTCGTCATTGAGAAAGGCGCCATG GATGTACTGTTTGTGGACTGTGACGATCAATGGAGCCCAGAGCCCGAAGTCEST: gi|18365754|gb|BJ197831.1|BJ197831
genomic: TGCCTTTCGACGACGAGAGCTTCGATGTCGTCATTGAGAAAGGCGCCATGgttagttcca ... gttggcgtagGATGTACTGTTTGTGGACTGTGACGATCAATGGAGCCCAGAGCCCGAAGTC
EST: GCCTTTCGACGACGAGAGCTTTCGATGTCGTCATTGAGAAAGGCGCCATG GATGTACTGTTTGTGGACTGTGACGATCAATGGAGCCCAGAGEST: gi|208352453|gb|DC910181.1|DC910181
genomic: GCCTTTCGACGACGAGAGCTT-CGATGTCGTCATTGAGAAAGGCGCCATGgttagttcca ... gttggcgtagGATGTACTGTTTGTGGACTGTGACGATCAATGGAGCCCAGAG
EST: TGCCTTTCGACGACGAGAGCTTCGATGTCGTCATTGAGAAAGGCGCCATG GATGTACTGTTTGTGGACTGTGACGATCAATGGAGCCCAGAGCCCGAAGTCEST: gi|208353897|gb|DC914065.1|DC914065
genomic: TGCCTTTCGACGACGAGAGCTTCGATGTCGTCATTGAGAAAGGCGCCATGgttagttcca ... gttggcgtagGATGTACTGTTTGTGGACTGTGACGATCAATGGAGCCCAGAGCCCGAAGTC
EST: TGCCTTTCGACGACNAGAGCTTCGATGTCGTCATTGAGAAAGGCGCCATG GATGTACTGTTTGTGGACTGTGACGATCAATGGAGCCCAGAGCCCGAAGTC
genomic: TGCCTTTCGACGACGAGAGCTTCGATGTCGTCATTGAGAAAGGCGCCATGgttagttcca ... gttggcgtagGATGTACTGTTTGTGGACTGTGACGATCAATGGAGCCCAGAGCCCGAAGTC
acattagattggctcattgctacgatttgattgatttctgaccctgttggcgtagGATGTACTGTTTGTGGACTGTGACGATCAATGGAGCCCAGAGCCCGAAGTCGCAAAGCGAGTGCGAGGAATGCTCGCGGAAGCGCACCGTGTGTTGAACC
ttctgac putative branch site (score: 4)
ccctgtt CT-rich tract
atttgatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagttccattccaatctcaagtttctcagtcttcttcttcttcttcttctccttcttctagcttactctctgcacaccgcatgttttctgacgcccatttcattttatttgtttattttattttatcatggtacattagattggctcattgctacgatttgattgatttctgaccctgttggcgtagGATGTACTGTTTGTGGACTGTGACGATCAATGGAGCCCAGAGCCCGAAGTCGCAAAGCGAGTGCGAGGAATGCTCGCGGAAGCGCACCGTGTGTTGAACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG