1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gcacgttttcattctcattacgattctacttacaaaaccatctcatcagttttacgttttggcggaaagaaacgtaatcaaatcggggttgaacttacatttatgagctggcacttgcagCTGTGCTGGAGGAGATGGAAGGCGTATCGAAAGGGGATGTGTTTGGTAGCGTGTTAGACCTTGACAGATTAAACATAGATTTATCTCCAGGCATCATGAT
species | Physcomitrella patens |
transcript | PP1S41_1V6.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGATGCTCTACGGGGGGAGGAGTGGGCGTTTGTGCAGCTTCCATTCGAAG CTGTGCTGGAGGAGATGGAAGGCGTATCGAAAGGGGATGTGTTTGGTAGCGEST: gi|162233825|gb|FC409675.1|FC409675
genomic: AGATGCTCTACGGGGGGAGGAGTGGGCGTTTGTGCAGCTTCCATTCGAAGgcacgttttc ... gcacttgcagCTGTGCTGGAGGAGATGGAAGGCGTATCGAAAGGGGATGTGTTTGGTAGCG
EST: AGATGCTCTACGGGGGGAGGAGTGGGCGTTTGTGCAGCTTCCATTCGAAG CTGTGCTGGAGGAGATGGAAGGCGTATCGAAAGGGGATGTGTTTGGTAGCGEST: gi|162233826|gb|FC409676.1|FC409676
genomic: AGATGCTCTACGGGGGGAGGAGTGGGCGTTTGTGCAGCTTCCATTCGAAGgcacgttttc ... gcacttgcagCTGTGCTGGAGGAGATGGAAGGCGTATCGAAAGGGGATGTGTTTGGTAGCG
EST: AGATGCTCTACGGGGGGAGGAGTGGGCGTTTGTGCAGCTTCCATTCGAAG CTGTGCTGGAGGAGATGGAAGGCGTATCGAAAGGGGATGTGTTTGGTAGCG
genomic: AGATGCTCTACGGGGGGAGGAGTGGGCGTTTGTGCAGCTTCCATTCGAAGgcacgttttc ... gcacttgcagCTGTGCTGGAGGAGATGGAAGGCGTATCGAAAGGGGATGTGTTTGGTAGCG
aaagaaacgtaatcaaatcggggttgaacttacatttatgagctggcacttgcagCTGTGCTGGAGGAGATGGAAGGCGTATCGAAAGGGGATGTGTTTGGTAGCGTGTTAGACCTTGACAGATTAAACATAGATTTATCTCCAGGCATCATGAT
aacttac putative branch site (score: 6)
ttacatttat TA-rich tract