1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaggtaagttcaatatctcttaaagtaattgtttgtctcttgaattcactgctttcgctgaattataccatcagtgaacttaacacgttagtgatatgctgtagtagcattgttgctgctgaaaacactctgtggattatgttttccctgcttgcagTTACTGGGACACTTTCGAGCCGAGGAGGCTCCCGAGTCTGAACTCAAACCTGTCCTTGCTGATGGCAG
species | Physcomitrella patens |
transcript | PP1S41_163V6.3 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ATGGAGGGGTACCACCGTCTGGAATGGCGTCAGTTTCATATCAAGAGCAG GEST: gi|162196614|gb|FC374904.1|FC374904
genomic: ATGGAGGGGTACCACCGTCTGGAATGGCGTCAGTTTCATATCAAGAGCAGgtaggtaagt ... ctgcttgcag-
EST: ATGGAGGGGTACCACCGTCTGGAATGGCGTCAGTTTCATATCAAGAGCAG GEST: gi|208351989|gb|DC925798.1|DC925798
genomic: ATGGAGGGGTACCACCGTCTGGAATGGCGTCAGTTTCATATCAAGAGCAGgtaggtaagt ... ctgcttgcag-
EST: ATGGAGGGGTACCACCGTCTGGAATGGCGTCAGTTTCATATCAAGAGCAG TTACTGGGACACTTTCGAGCCGAGGAGGCTCCCGAGTCCGAACTCAAACCTEST: gi|100355722|gb|BY965113.1|BY965113
genomic: ATGGAGGGGTACCACCGTCTGGAATGGCGTCAGTTTCATATCAAGAGCAGgtaggtaagt ... ctgcttgcagTTACTGGGACACTTTCGAGCCGAGGAGGCTCCCGAGTCTGAACTCAAACCT
EST: ATGGAGGGGTACCACCGTCTGGAATGGCGTCAGTTTCATATCAAGAGCAG TTACTGGGACACTTTCGAGCCGAGGAGGCTCCCGAGTCTGAACTCAAACCTEST: gi|100420676|gb|BY993459.1|BY993459
genomic: ATGGAGGGGTACCACCGTCTGGAATGGCGTCAGTTTCATATCAAGAGCAGgtaggtaagt ... ctgcttgcagTTACTGGGACACTTTCGAGCCGAGGAGGCTCCCGAGTCTGAACTCAAACCT
EST: ATGGAGGGGTACCACCGTCTGGAATGGCGTCAGTTTCATATCAAGAGCAG TTACTGGGACACTTTCGAGCCGAGGAGGCTCCCGAGTCTGAACTCAAACCT
genomic: ATGGAGGGGTACCACCGTCTGGAATGGCGTCAGTTTCATATCAAGAGCAGgtaggtaagt ... ctgcttgcagTTACTGGGACACTTTCGAGCCGAGGAGGCTCCCGAGTCTGAACTCAAACCT
agtagcattgttgctgctgaaaacactctgtggattatgttttccctgcttgcagTTACTGGGACACTTTCGAGCCGAGGAGGCTCCCGAGTCTGAACTCAAACCTGTCCTTGCTGATGGCAG
tgttttccctgctt CT-rich tract
attatgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaggtaagttcaatatctcttaaagtaattgtttgtctcttgaattcactgctttcgctgaattataccatcagtgaacttaacacgttagtgatatgctgtagtagcattgttgctgctgaaaacactctgtggattatgttttccctgcttgcagTTACTGGGACACTTTCGAGCCGAGGAGGCTCCCGAGTCTGAACTCAAACCTGTCCTTGCTGATGGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT