1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaagggccaactattttatatagcgaagtttaaatactgtccaacatctggccccattctgacatagaaaagaaaattcttgactgtatttgcagTTGCCGATGGAAAGCTTGGCAATGAAGAGGGCGCACCCTATGATTGCATTCACGTCGGTGCTGCTGCTCCAG
species | Physcomitrella patens |
transcript | PP1S41_157V6.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GGAGACACCGGCGGGTGAGCTCATGGACAAAGGGAGAATCGTTGTACATG TTGCCGATGGAAAGCTTGGCAATGAAGAGGGCGCACCCTATGATTGCATTCEST: gi|37832129|gb|BJ590141.1|BJ590141
genomic: GGAGACACCGGCGGGTGAGCTCATGGACAAAGGGAGAATCGTTGTACATGgtaagggcca ... gtatttgcagTTGCCGATGGAAAGCTTGGCAATGAAGAGGGCGCACCCTATGATTGCATTC
EST: GGAGACACCGGCGGGTGAGCTCATGGACAAAGGGAGAATCGTTGTACATG TTGCCGATGGAAAGCTTGGCAATGAAGAGGGCGCACCCTATGATTGCATTCEST: gi|37852731|gb|BJ610739.1|BJ610739
genomic: GGAGACACCGGCGGGTGAGCTCATGGACAAAGGGAGAATCGTTGTACATGgtaagggcca ... gtatttgcagTTGCCGATGGAAAGCTTGGCAATGAAGAGGGCGCACCCTATGATTGCATTC
EST: GGAGACACCGGCGGGTGAGCTCATGGACAAAGGGAGAATCGTTGTACATG TTGCCGATGGAAAGCTTGGCAATGAAGAGGGCGCACCCTATGATTGCATTC
genomic: GGAGACACCGGCGGGTGAGCTCATGGACAAAGGGAGAATCGTTGTACATGgtaagggcca ... gtatttgcagTTGCCGATGGAAAGCTTGGCAATGAAGAGGGCGCACCCTATGATTGCATTC
ccaacatctggccccattctgacatagaaaagaaaattcttgactgtatttgcagTTGCCGATGGAAAGCTTGGCAATGAAGAGGGCGCACCCTATGATTGCATTCACGTCGGTGCTGCTGCTCCAG
atagaaaagaaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagggccaactattttatatagcgaagtttaaatactgtccaacatctggccccattctgacatagaaaagaaaattcttgactgtatttgcagTTGCCGATGGAAAGCTTGGCAATGAAGAGGGCGCACCCTATGATTGCATTCACGTCGGTGCTGCTGCTCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT