Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgaacacatgaattaagcttaagttggcgcttggagctagtatcctcacctagtgattttccgtcttcgttatattgatggtgactttgtttttgtacagTTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAGGAGCCATGGCGTATTATGGATTTCTTCTCGCATGTCCCTGAGGCCTGCA

Basic information

species Physcomitrella patens
transcript PP1S3_353V6.2
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S3_353V6.2 (Physcomitrella patens), 3'ss of exon 4
lower sequence: EDP00871 (Chlamydomonas reinhardtii), 3'ss of exon 5
------------------------------------------------------------------------------------------tgaacacatgaattaagcttaagttggcgct-tggagctagtatcctcacctagtga-ttttccgtcttcgttatattgatggtgactttgtttt-------tgtacagTTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAGGAGCCATGGCGTATTATGGATTTCTTCTCGCATGTCCCTGAGGCCTGCA
                                                                                           | |  |     ||  ||    |   ||||| || | | | |   | |  ||| ||  | ||||   |||  |   |    ||||   ||  |           |  ||||||| || ||| |||||||||| ||||| ||||||||||| ||||| |||||| | ||||| |||||||| |                           
gtgaggaggcatggggaggaggagggaaggacggaggggctgcttggcgcgcataaggccgcatacggagggcctttgcttgtaggctctggtaggcccaccttccgccgcggcccgcgctatgtatccacttcgccccactactggctcttcctctttcaatgcttgccagGTGTTCTTCATCCGCGACGGCATGAAGTTCCCGGACATGGTTCACGCCTTCAAGCCCAACCCCAAGAGCCACATCCAGGAGGCCTGGCGCATTATGGACT---------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100397012|gb|BY953940.1|BY953940
EST:     ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAG                         TTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
genomic: ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAGgtacatcaca ... ttttgtacagTTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
EST: gi|100413461|gb|BY956682.1|BY956682
EST:     ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAG                         TTCCCTGATATGATTCACGCCTTGAAGCCGA
genomic: ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAGgtacatcaca ... ttttgtacagTTCCCTGATATGATTCACGCCTTGAAGCCGA
EST: gi|19790424|gb|BQ041863.1|BQ041863
EST:     ATTCTTCATTCGAGATGGGATTAAG                         TTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
genomic: ATTCTTCATTCGAGATGGGATTAAGgtacatcaca ... ttttgtacagTTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
EST: gi|100401878|gb|BY954755.1|BY954755
EST:     ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAG                         TTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
genomic: ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAGgtacatcaca ... ttttgtacagTTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
EST: gi|162160440|gb|FC337441.1|FC337441
EST:     ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAG                         TTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
genomic: ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAGgtacatcaca ... ttttgtacagTTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
EST: gi|208366827|gb|DC940141.1|DC940141
EST:     ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAG                         TTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
genomic: ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAGgtacatcaca ... ttttgtacagTTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
EST: gi|100388487|gb|BY952089.1|BY952089
EST:     ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAG                         TTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
genomic: ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAGgtacatcaca ... ttttgtacagTTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
EST: gi|100389395|gb|BY988873.1|BY988873
EST:     ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAG                         TTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
genomic: ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAGgtacatcaca ... ttttgtacagTTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
EST: gi|100441770|gb|BY962861.1|BY962861
EST:     ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAG                         TTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCGAGAGTCACATTCAG
genomic: ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAGgtacatcaca ... ttttgtacagTTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
EST: gi|208390381|gb|DC933426.1|DC933426
EST:     ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAG                         TTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
genomic: ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAGgtacatcaca ... ttttgtacagTTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
EST: gi|100437950|gb|BY961577.1|BY961577
EST:     ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAG                         TTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
genomic: ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAGgtacatcaca ... ttttgtacagTTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
EST: gi|100388313|gb|BY951915.1|BY951915
EST:     ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAG                         TTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
genomic: ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAGgtacatcaca ... ttttgtacagTTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
EST: gi|100415088|gb|BY975158.1|BY975158
EST:     ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAG                         TTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCA
genomic: ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAGgtacatcaca ... ttttgtacagTTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCA
EST: gi|208397839|gb|DC912034.1|DC912034
EST:     ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAG                         TTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
genomic: ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAGgtacatcaca ... ttttgtacagTTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
EST: gi|100431352|gb|BY960153.1|BY960153
EST:     ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTA-G                         TTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCA-GAGTCACATTCAG
genomic: ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAGgtacatcaca ... ttttgtacagTTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
EST: gi|162269381|gb|FC445249.1|FC445249
EST:     ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAG                         TTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
genomic: ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAGgtacatcaca ... ttttgtacagTTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
EST: gi|208384128|gb|DC911264.1|DC911264
EST:     ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTANG                         TTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
genomic: ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAGgtacatcaca ... ttttgtacagTTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
EST: gi|100422959|gb|BY958085.1|BY958085
EST:     TATGGTCGGCAACAACATTCCAGTATTTCT-CATTCGAGATGGGATTAGG                         TTCCCTGATATGATT
genomic: TATGGTCGGCAACAACATTCCAGTATT-CTTCATTCGAGATGGGATTAAGgtacatcaca ... ttttgtacagTTCCCTGATATGATT
EST: gi|100373522|gb|BY948971.1|BY948971
EST:     ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAG                         TTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCCAGAGTCACATTCAG
genomic: ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAGgtacatcaca ... ttttgtacagTTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
EST: gi|100425186|gb|BY977016.1|BY977016
EST:     ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAG                         TTCCCTGATATGATTCACGCCTTGAAGCCCGAACCC-AAGAGTCACATTCA
genomic: ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAGgtacatcaca ... ttttgtacagTTCCCTGATATGATTCACGCCTTGAAGCC-GAACCCCAAGAGTCACATTCA
EST: gi|100441216|gb|BY980837.1|BY980837
EST:     ATATGGTCGGCAACAACATTCCCGTATTCTTCATTCGAGATGGGATTAAG                         TCCCCTGATAATGAT-CACGCCTTGA
genomic: ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAGgtacatcaca ... ttttgtacagTTCCCTGATA-TGATTCACGCCTTGA
EST: gi|100399198|gb|BY954249.1|BY954249
EST:     ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAG                         TTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
genomic: ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAGgtacatcaca ... ttttgtacagTTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
EST: gi|162171823|gb|FC348973.1|FC348973
EST:     ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAG                         TTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
genomic: ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAGgtacatcaca ... ttttgtacagTTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
EST: gi|100385814|gb|BY951008.1|BY951008
EST:     ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAG                         TTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
genomic: ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAGgtacatcaca ... ttttgtacagTTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
EST: gi|100355998|gb|BY946143.1|BY946143
EST:     ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAG                         TTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
genomic: ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAGgtacatcaca ... ttttgtacagTTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
EST: gi|100403993|gb|BY955201.1|BY955201
EST:     ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAG                         TTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
genomic: ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAGgtacatcaca ... ttttgtacagTTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
EST: gi|208392447|gb|DC907924.1|DC907924
EST:     ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAG                         TTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
genomic: ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAGgtacatcaca ... ttttgtacagTTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
EST: gi|100356632|gb|BY965202.1|BY965202
EST:     ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAG                         TTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
genomic: ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAGgtacatcaca ... ttttgtacagTTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
EST: gi|67508120|gb|BJ940991.1|BJ940991
EST:     ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAG                         TTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
genomic: ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAGgtacatcaca ... ttttgtacagTTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
EST: gi|100369670|gb|BY948592.1|BY948592
EST:     ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAG                         TTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCNAGAGTCACATTCAG
genomic: ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAGgtacatcaca ... ttttgtacagTTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
EST: gi|208376904|gb|DC906845.1|DC906845
EST:     ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAG                         TTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
genomic: ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAGgtacatcaca ... ttttgtacagTTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
EST: gi|208387941|gb|DC932865.1|DC932865
EST:     ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAG                         TTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
genomic: ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAGgtacatcaca ... ttttgtacagTTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
EST: gi|162190690|gb|FC367576.1|FC367576
EST:     ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAG                         TTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
genomic: ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAGgtacatcaca ... ttttgtacagTTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
EST: gi|100402105|gb|BY973219.1|BY973219
EST:     ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAG                         TTTCCTGATATGATTCACGCCTTG
genomic: ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAGgtacatcaca ... ttttgtacagTTCCCTGATATGATTCACGCCTTG
EST: gi|67573397|gb|BJ946221.1|BJ946221
EST:     ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAG                         TTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
genomic: ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAGgtacatcaca ... ttttgtacagTTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
EST: gi|100449037|gb|CJ973336.1|CJ973336
EST:     ATATGGTCGGCANCAACATTCCAGTATTCTTCATNCGAGATGGGAT-AAG                         TTCCNTGATATGATNCACGCC
genomic: ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAGgtacatcaca ... ttttgtacagTTCCCTGATATGATTCACGCC
EST: gi|100452195|gb|CJ975149.1|CJ975149
EST:     ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAG                         TTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
genomic: ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAGgtacatcaca ... ttttgtacagTTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
EST: gi|100385323|gb|BY950915.1|BY950915
EST:     ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAG                         TTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
genomic: ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAGgtacatcaca ... ttttgtacagTTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
EST: gi|100388606|gb|BY970754.1|BY970754
EST:     ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAG                         TTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
genomic: ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAGgtacatcaca ... ttttgtacagTTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
EST: gi|208397130|gb|DC908144.1|DC908144
EST:     ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAG                         TTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
genomic: ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAGgtacatcaca ... ttttgtacagTTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
EST: gi|18325053|gb|BJ157049.1|BJ157049
EST:     ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAG                         TTCCCTGATATGATTCACGCCTTGAAG
genomic: ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAGgtacatcaca ... ttttgtacagTTCCCTGATATGATTCACGCCTTGAAG
EST: gi|100429808|gb|BY978099.1|BY978099
EST:     TATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAAG                         T-CCCTGATATGATTCACGCCTTGAAGCCGAA
genomic: TATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAA-Ggtacatcaca ... ttttgtacagTTCCCTGATATGATTCACGCCTTGAAGCCGAA
EST: gi|100400264|gb|BY954390.1|BY954390
EST:     ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAG                         TTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
genomic: ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAGgtacatcaca ... ttttgtacagTTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
EST: gi|100389047|gb|BY952251.1|BY952251
EST:     ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAG                         TTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
genomic: ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAGgtacatcaca ... ttttgtacagTTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
EST: gi|100445088|gb|BY964387.1|BY964387
EST:     ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAG                         TTCCCTGATATGATT
genomic: ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAGgtacatcaca ... ttttgtacagTTCCCTGATATGATT
EST: gi|208400560|gb|DC904536.1|DC904536
EST:     ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAG                         TTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
genomic: ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAGgtacatcaca ... ttttgtacagTTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
EST: gi|100426840|gb|BY977389.1|BY977389
EST:     ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAG                         TTCCCTGATATGATTCACGCCTTGAAGCCG
genomic: ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAGgtacatcaca ... ttttgtacagTTCCCTGATATGATTCACGCCTTGAAGCCG
EST: gi|100385394|gb|BY950986.1|BY950986
EST:     ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAG                         TTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
genomic: ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAGgtacatcaca ... ttttgtacagTTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
EST: gi|100451699|gb|CJ974897.1|CJ974897
EST:     TATGGTCGGCANCAACATTCCCAGTATTCTTCATTCGAGATGGGATTAAG                         TTCC-TGATATGATNCACGCCTTGA
genomic: TATGGTCGGCAACAACATTCC-AGTATTCTTCATTCGAGATGGGATTAAGgtacatcaca ... ttttgtacagTTCCCTGATATGATTCACGCCTTGA
EST: gi|100417386|gb|BY957305.1|BY957305
EST:     ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAG                         T-CCCTGATATGATTCACGCCTTGAAGCCGAACC
genomic: ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAGgtacatcaca ... ttttgtacagTTCCCTGATATGATTCACGCCTTGAAGCCGAACC
EST: gi|100354185|gb|BY945750.1|BY945750
EST:     ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAG                         TTCCCTGATAT
genomic: ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAGgtacatcaca ... ttttgtacagTTCCCTGATAT
EST: gi|100378557|gb|BY968659.1|BY968659
EST:     ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTCAG                         TTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCA-GAGTCACATTCAG
genomic: ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAGgtacatcaca ... ttttgtacagTTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
EST: gi|100413876|gb|BY975017.1|BY975017
EST:     ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAG                         TTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTC
genomic: ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAGgtacatcaca ... ttttgtacagTTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTC
EST: gi|100394319|gb|BY972022.1|BY972022
EST:     ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAG                         TTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
genomic: ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAGgtacatcaca ... ttttgtacagTTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
EST: gi|100430614|gb|BY978308.1|BY978308
EST:     ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAG                         TTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
genomic: ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAGgtacatcaca ... ttttgtacagTTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
EST: gi|208348570|gb|DC905835.1|DC905835
EST:     ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAG                         TTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
genomic: ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAGgtacatcaca ... ttttgtacagTTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
EST: gi|67507546|gb|BJ940428.1|BJ940428
EST:     ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAG                         TTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
genomic: ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAGgtacatcaca ... ttttgtacagTTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
EST: gi|100367504|gb|BY984724.1|BY984724
EST:     ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAG                         TTCCCTGATATGATTCACGCCTTGAAAGC-GAACCCCAAGAGTCACATTCA
genomic: ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAGgtacatcaca ... ttttgtacagTTCCCTGATATGATTCACGCCTTGAA-GCCGAACCCCAAGAGTCACATTCA
EST: gi|208398062|gb|DC904367.1|DC904367
EST:     ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAG                         TTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
genomic: ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAGgtacatcaca ... ttttgtacagTTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcacctagtgattttccgtcttcgttatattgatggtgactttgtttttgtacagTTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAGGAGCCATGGCGTATTATGGATTTCTTCTCGCATGTCCCTGAGGCCTGCA
                                       ctttgttttt  CT-rich tract
                        ttatattgat  TA-rich tract