Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttattctggcaagagtattagttgttttgtttggttatcaacccacaagcgtttgtatttatctgtttctaaatttatttataattggatttcttttcagTACAAGTTGTGCAAGGTGAGGTCTGCTCAGTTTGGGGATAAGGGCGTTCCCTACATTACCACTTTCGACGGCCGGACAATCAG

Basic information

species Physcomitrella patens
transcript PP1S39_422V6.3
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208396196|gb|DC923990.1|DC923990
EST:     TCGTTTCACCCTGCACAACATCAGTGCGGAGGAGGCGAAG                         TACAAGTTGTGCAAGGTGAGGTCTGCTCAGTTTGGGGATAAGGGCGTTCCC
genomic: TCGTTTCACCCTGCACAACATCAGTGCGGAGGAGGCGAAGgtaagcgcct ... ttcttttcagTACAAGTTGTGCAAGGTGAGGTCTGCTCAGTTTGGGGATAAGGGCGTTCCC
EST: gi|208375001|gb|DC944796.1|DC944796
EST:     CACCCTGCACAACATCAGTGCGGAGGAGGCGAAG                         TACAAGTTGTGCAAGGTGAGGTCTGCTCAGTTTGGGGATAAGGGCGTTCCC
genomic: CACCCTGCACAACATCAGTGCGGAGGAGGCGAAGgtaagcgcct ... ttcttttcagTACAAGTTGTGCAAGGTGAGGTCTGCTCAGTTTGGGGATAAGGGCGTTCCC
EST: gi|67728268|gb|BJ978527.1|BJ978527
EST:     ACAACAAAGGTCGTTTCACCCTGCACAACATCAGTGCGGAGGAGGCGAAG                         TACAAGTTGTGCAAGGTGAGGTCTGCTCAGTTTGGGGATAAGGGCGTTCCC
genomic: ACAACAAAGGTCGTTTCACCCTGCACAACATCAGTGCGGAGGAGGCGAAGgtaagcgcct ... ttcttttcagTACAAGTTGTGCAAGGTGAGGTCTGCTCAGTTTGGGGATAAGGGCGTTCCC
EST: gi|67725765|gb|BJ976024.1|BJ976024
EST:     ACAACAAAGGTCGTTTCACCCTGCACAACATCAGTGCGGAGGAGGCGAAG                         TACAAGTTGTGCAAGGTGAGGTCTGCTCAGTTTGGGGATAAGGGCGTTCCC
genomic: ACAACAAAGGTCGTTTCACCCTGCACAACATCAGTGCGGAGGAGGCGAAGgtaagcgcct ... ttcttttcagTACAAGTTGTGCAAGGTGAGGTCTGCTCAGTTTGGGGATAAGGGCGTTCCC
EST: gi|208390314|gb|DC949540.1|DC949540
EST:     ACNACAAAGGTCGTTTCACCCTGCACAACATCAGTGCGGAGGAGGCGAAG                         TACAAGTTGTGCAAGGTGAGGTCTGCTCAGTTTGGGGATAAGGGCGTTTCC
genomic: ACAACAAAGGTCGTTTCACCCTGCACAACATCAGTGCGGAGGAGGCGAAGgtaagcgcct ... ttcttttcagTACAAGTTGTGCAAGGTGAGGTCTGCTCAGTTTGGGGATAAGGGCG-TTCC
EST: gi|208381962|gb|DC923458.1|DC923458
EST:     ACAACAAAGGTCGTTTCACCCTGCACAACATCAGTGCGGAGGAGGCGAAG                         TACAAGTTGTGCAAGGTGAGGTCTGCTCAGTTTGGGGATAAGGGCGTTCCC
genomic: ACAACAAAGGTCGTTTCACCCTGCACAACATCAGTGCGGAGGAGGCGAAGgtaagcgcct ... ttcttttcagTACAAGTTGTGCAAGGTGAGGTCTGCTCAGTTTGGGGATAAGGGCGTTCCC
EST: gi|162222486|gb|FC397207.1|FC397207
EST:     ACAACAAAGGTCGTTTCACCCTGCACAACATCAGTGCGGAGGAGGCGAAG                         TACAAGTTGTGCAAGGTGAGGTCTGCTCAGTTTGGGGATAAGGGCGTTCCC
genomic: ACAACAAAGGTCGTTTCACCCTGCACAACATCAGTGCGGAGGAGGCGAAGgtaagcgcct ... ttcttttcagTACAAGTTGTGCAAGGTGAGGTCTGCTCAGTTTGGGGATAAGGGCGTTCCC
EST: gi|67726924|gb|BJ977183.1|BJ977183
EST:     ACAACAAAGGTCGTTTCACCCTGCACAACATCAGTGCGGAGGAGGCGAAG                         TACAAGTTGTGCAAGGTGAGGTCTGCTCAGTTTGGGGATAAGGGCGTTCCC
genomic: ACAACAAAGGTCGTTTCACCCTGCACAACATCAGTGCGGAGGAGGCGAAGgtaagcgcct ... ttcttttcagTACAAGTTGTGCAAGGTGAGGTCTGCTCAGTTTGGGGATAAGGGCGTTCCC
EST: gi|208365979|gb|DC955498.1|DC955498
EST:     ACAACAAAGGTCGTTTCACCCTGCACAACATCAGTGCGGAGGAGGCGAAG                         TACAAGTTGTGCAAGGTGAGGTCTGCTCAGTTTGGGGATAAGGGCGTTCCC
genomic: ACAACAAAGGTCGTTTCACCCTGCACAACATCAGTGCGGAGGAGGCGAAGgtaagcgcct ... ttcttttcagTACAAGTTGTGCAAGGTGAGGTCTGCTCAGTTTGGGGATAAGGGCGTTCCC
EST: gi|37828603|gb|BJ586615.1|BJ586615
EST:     ACAACAAAGGTCGTTTCACCCTGCACAACATCAGTGCGGAGGAGGCGAAG                         TACAAGTTGTGCAAGGTGAGGTCTGCTCAGTTTGGGGATAAGGGCGTTCCC
genomic: ACAACAAAGGTCGTTTCACCCTGCACAACATCAGTGCGGAGGAGGCGAAGgtaagcgcct ... ttcttttcagTACAAGTTGTGCAAGGTGAGGTCTGCTCAGTTTGGGGATAAGGGCGTTCCC
EST: gi|162278195|gb|FC454430.1|FC454430
EST:     ACAACAAAGGTCGTTTCACCCTGCACAACATCAGTGCGGAGGAGGCGAAG                         TACAAGTTGTGCAAGGTGAGGTCTGCTCAGTTTGGGGATAAGGGCGTTCCC
genomic: ACAACAAAGGTCGTTTCACCCTGCACAACATCAGTGCGGAGGAGGCGAAGgtaagcgcct ... ttcttttcagTACAAGTTGTGCAAGGTGAGGTCTGCTCAGTTTGGGGATAAGGGCGTTCCC
EST: gi|67725062|gb|BJ975321.1|BJ975321
EST:     ACAACAAAGGTCGTTTCACCCTGCACAACATCAGTGCGGAGGAGGCGAAG                         TACAAGTTGTGCAAGGTGAGGTCTGCTCAGTTTGGGGATAAGGGCGTTCCC
genomic: ACAACAAAGGTCGTTTCACCCTGCACAACATCAGTGCGGAGGAGGCGAAGgtaagcgcct ... ttcttttcagTACAAGTTGTGCAAGGTGAGGTCTGCTCAGTTTGGGGATAAGGGCGTTCCC
EST: gi|18331092|gb|BJ163098.1|BJ163098
EST:     ACAACAAAGGTCGTTTCACCCTGCACAACATCAGTGCGGAGGAGGCGAAG                         TACAAGTTGTGCAAGGTGAGGTCTGCTCAGTTTGGGGATAAGGGCGTTCCC
genomic: ACAACAAAGGTCGTTTCACCCTGCACAACATCAGTGCGGAGGAGGCGAAGgtaagcgcct ... ttcttttcagTACAAGTTGTGCAAGGTGAGGTCTGCTCAGTTTGGGGATAAGGGCGTTCCC
EST: gi|67723906|gb|BJ974165.1|BJ974165
EST:     ACAACAAAGGTCGTTTCACCCTGCACAACATCAGTGCGGAGGAGGCGAAG                         TACAAGTTGTGCAAGGTGAGGTCTGCTCAGTTTGGGGATAAGGGCGTTCCC
genomic: ACAACAAAGGTCGTTTCACCCTGCACAACATCAGTGCGGAGGAGGCGAAGgtaagcgcct ... ttcttttcagTACAAGTTGTGCAAGGTGAGGTCTGCTCAGTTTGGGGATAAGGGCGTTCCC
EST: gi|162258263|gb|FC434662.1|FC434662
EST:     ACAACAAAGGTCGTTTCACCCTGCACAACATCAGTGCGGAGGAGGCGAAG                         TACAAGTTGTGCAAGGTGAGGTCTGCTCAGTTTGGGGATAAGGGCGTTCCC
genomic: ACAACAAAGGTCGTTTCACCCTGCACAACATCAGTGCGGAGGAGGCGAAGgtaagcgcct ... ttcttttcagTACAAGTTGTGCAAGGTGAGGTCTGCTCAGTTTGGGGATAAGGGCGTTCCC
EST: gi|162244480|gb|FC422653.1|FC422653
EST:     ACAACAAAGGTCGTTTCACCCTGCACAACATCAGTGCGGAGGAGGCGAAG                         TACAAGTTGTGCAAGGTGAGGTCTGCTCAGTTTGGGGATAAGGGCGTTCCC
genomic: ACAACAAAGGTCGTTTCACCCTGCACAACATCAGTGCGGAGGAGGCGAAGgtaagcgcct ... ttcttttcagTACAAGTTGTGCAAGGTGAGGTCTGCTCAGTTTGGGGATAAGGGCGTTCCC
EST: gi|162258593|gb|FC434808.1|FC434808
EST:     ACAACAAAGGTCGTTTCACCCTGCACAACATCAGTGCGGAGGAGGCGAAG                         TACAAGTTGTGCAAGGTGAGGTCTGCTCAGTTTGGGGATAAGGGCGTTCCC
genomic: ACAACAAAGGTCGTTTCACCCTGCACAACATCAGTGCGGAGGAGGCGAAGgtaagcgcct ... ttcttttcagTACAAGTTGTGCAAGGTGAGGTCTGCTCAGTTTGGGGATAAGGGCGTTCCC
EST: gi|162256663|gb|FC433181.1|FC433181
EST:     ACAACAAAGGTCGTTTCACCCTGCACAACATCAGTGCGGAGGAGGCGAAG                         TACAAGTTGTGCAAGGTGAGGTCTGCTCAGTTTGGGGATAAGGGCGTTCCC
genomic: ACAACAAAGGTCGTTTCACCCTGCACAACATCAGTGCGGAGGAGGCGAAGgtaagcgcct ... ttcttttcagTACAAGTTGTGCAAGGTGAGGTCTGCTCAGTTTGGGGATAAGGGCGTTCCC
EST: gi|162256664|gb|FC433182.1|FC433182
EST:     ACAACAAAGGTCGTTTCACCCTGCACAACATCAGTGCGGAGGAGGCGAAG                         TACAAGTTGTGCAAGGTGAGGTCTGCTCAGTTTGGGGATAAGGGCGTTCCC
genomic: ACAACAAAGGTCGTTTCACCCTGCACAACATCAGTGCGGAGGAGGCGAAGgtaagcgcct ... ttcttttcagTACAAGTTGTGCAAGGTGAGGTCTGCTCAGTTTGGGGATAAGGGCGTTCCC
EST: gi|208388722|gb|DC953470.1|DC953470
EST:     AAGGTCGNTTCACCCTGCACAACATCAGTGCGGAGGAGGCGAAG                         TACAAGTTGTGCAAGGTGAGGTCTGCTCAGTTTGGGGATAAGGGCGTTCCC
genomic: AAGGTCGTTTCACCCTGCACAACATCAGTGCGGAGGAGGCGAAGgtaagcgcct ... ttcttttcagTACAAGTTGTGCAAGGTGAGGTCTGCTCAGTTTGGGGATAAGGGCGTTCCC
EST: gi|162262039|gb|FC436846.1|FC436846
EST:     ACAACAAAGGTCGTTTCACCCTGCACAACATCAGTGCGGAGGAGGCGAAG                         TACAAGTTGTGCAAGGTGAGGTCTGCTCAGTTTGGGGATAAGGGCGTTCCC
genomic: ACAACAAAGGTCGTTTCACCCTGCACAACATCAGTGCGGAGGAGGCGAAGgtaagcgcct ... ttcttttcagTACAAGTTGTGCAAGGTGAGGTCTGCTCAGTTTGGGGATAAGGGCGTTCCC
EST: gi|67697946|gb|BJ958179.1|BJ958179
EST:     ACAACAAAGGTCGTTTCACCCTGCACAACATCAGTGCGGAGGAGGCGAAG                         TACAAGTTGTGCAAGGTGAGGTCTGCTCAGTTTGGGGATAAGGGCGTTCCC
genomic: ACAACAAAGGTCGTTTCACCCTGCACAACATCAGTGCGGAGGAGGCGAAGgtaagcgcct ... ttcttttcagTACAAGTTGTGCAAGGTGAGGTCTGCTCAGTTTGGGGATAAGGGCGTTCCC
EST: gi|162207390|gb|FC383947.1|FC383947
EST:     ACAACAAAGGTCGTTTCACCCTGCACAACATCAGTGCGGAGGAGGCGAAG                         TACAAGTTGTGCAAGGTGAGGTCTGCTCAGTTTGGGGATAAGGGCGTTCCC
genomic: ACAACAAAGGTCGTTTCACCCTGCACAACATCAGTGCGGAGGAGGCGAAGgtaagcgcct ... ttcttttcagTACAAGTTGTGCAAGGTGAGGTCTGCTCAGTTTGGGGATAAGGGCGTTCCC
EST: gi|208373055|gb|DC948820.1|DC948820
EST:     CAACNAAGGGTCGTTTCACCCTGCACNACATCAGTGCGGAGGAGGCGAAG                         TACAAGTTGTGCAAGGTGAGGTCTGCTCAGTTTGGGGATAAGGGCGTTCCC
genomic: CAAC-AAAGGTCGTTTCACCCTGCACAACATCAGTGCGGAGGAGGCGAAGgtaagcgcct ... ttcttttcagTACAAGTTGTGCAAGGTGAGGTCTGCTCAGTTTGGGGATAAGGGCGTTCCC
EST: gi|67704660|gb|BJ964893.1|BJ964893
EST:     ACAACAAAGGTCGTTTCACCCTGCACAACATCAGTGCGGAGGAGGCGAAG                         TACAAGTTGTGCAAGGTGAGGTCTGCTCAGTTTGGGGATAAGGGCGTTCCC
genomic: ACAACAAAGGTCGTTTCACCCTGCACAACATCAGTGCGGAGGAGGCGAAGgtaagcgcct ... ttcttttcagTACAAGTTGTGCAAGGTGAGGTCTGCTCAGTTTGGGGATAAGGGCGTTCCC
EST: gi|19780043|gb|BQ039503.1|BQ039503
EST:     ACAACAAAGGTCGTTTCACCCTGCACAACATCAGTGCGGAGGAGGCGAAG                         TACAAGTTGTGCAAGGTGAGGTCTGCTCAGTTTGGGGATAAGGGCGTTCCC
genomic: ACAACAAAGGTCGTTTCACCCTGCACAACATCAGTGCGGAGGAGGCGAAGgtaagcgcct ... ttcttttcagTACAAGTTGTGCAAGGTGAGGTCTGCTCAGTTTGGGGATAAGGGCGTTCCC
EST: gi|162198061|gb|FC372088.1|FC372088
EST:     ACAACAAAGGTCGTTTCACCCTGCACAACATCAGTGCGGAGGAGGCGAAG                         TACAAGTTGTGCAAGGTGAGGTCTGCTCAGTTTGGGGATAAGGGCGTTCCC
genomic: ACAACAAAGGTCGTTTCACCCTGCACAACATCAGTGCGGAGGAGGCGAAGgtaagcgcct ... ttcttttcagTACAAGTTGTGCAAGGTGAGGTCTGCTCAGTTTGGGGATAAGGGCGTTCCC
EST: gi|19789495|gb|BQ041339.1|BQ041339
EST:     ACAACAAAGGTCGTTTCACCCTGCACAACATCAGTGCGGAGGAGGCGAAG                         TACAAGTTGTGCAAGGTGAGGTCTGCTCAGTTTGGGGATAAGGGCGTTCCC
genomic: ACAACAAAGGTCGTTTCACCCTGCACAACATCAGTGCGGAGGAGGCGAAGgtaagcgcct ... ttcttttcagTACAAGTTGTGCAAGGTGAGGTCTGCTCAGTTTGGGGATAAGGGCGTTCCC
EST: gi|208386291|gb|DC953004.1|DC953004
EST:     GTCG-TTCACCCTGCACAACATCAGTGCGGAGGAGGCGAAG                         TACAAGTTGTGCAAGGTGAGGTCTGCTCAGTTTGGGGATAAGGGCGTTCCC
genomic: GTCGTTTCACCCTGCACAACATCAGTGCGGAGGAGGCGAAGgtaagcgcct ... ttcttttcagTACAAGTTGTGCAAGGTGAGGTCTGCTCAGTTTGGGGATAAGGGCGTTCCC
EST: gi|7047344|gb|AW477238.1|AW477238
EST:     ACAACAAAGGTCGTTTCACCCTGCACAACATCAGTGCGGAGGAGGCGAAG                         TACAAGTTGTGCAAGGTGAGGTCTGCTCAGTTTGGGGATAAGGGCGTTCCC
genomic: ACAACAAAGGTCGTTTCACCCTGCACAACATCAGTGCGGAGGAGGCGAAGgtaagcgcct ... ttcttttcagTACAAGTTGTGCAAGGTGAGGTCTGCTCAGTTTGGGGATAAGGGCGTTCCC
EST: gi|67724739|gb|BJ974998.1|BJ974998
EST:     ACAACAAAGGTCGTTTCACCCTGCACAACATCAGTGCGGAGGAGGCGAAG                         TACAAGTTGTGCAAGGTGAGGTCTGCTCAGTTTGGGGATAAGGGCGTTCCC
genomic: ACAACAAAGGTCGTTTCACCCTGCACAACATCAGTGCGGAGGAGGCGAAGgtaagcgcct ... ttcttttcagTACAAGTTGTGCAAGGTGAGGTCTGCTCAGTTTGGGGATAAGGGCGTTCCC
EST: gi|15327286|gb|BI487873.1|BI487873
EST:     ACAACAAAGGTCGTTTCACCCTGCACAACATCAGTGCGGAGGAGGCGAAG                         TACAAGTTGTGCAAGGTGAGGTCTGCTCAGTTTGGGGATAAGGGCGTTCCC
genomic: ACAACAAAGGTCGTTTCACCCTGCACAACATCAGTGCGGAGGAGGCGAAGgtaagcgcct ... ttcttttcagTACAAGTTGTGCAAGGTGAGGTCTGCTCAGTTTGGGGATAAGGGCGTTCCC
EST: gi|162270732|gb|FC446345.1|FC446345
EST:     ACAACAAAGGTCGTTTCACCCTGCACAACATCAGTGCGGAGGAGGCGAAG                         TACAAGTTGTGCAAGGTGAGGTCTGCTCAGTTTGGGGATAAGGGCGTTCCC
genomic: ACAACAAAGGTCGTTTCACCCTGCACAACATCAGTGCGGAGGAGGCGAAGgtaagcgcct ... ttcttttcagTACAAGTTGTGCAAGGTGAGGTCTGCTCAGTTTGGGGATAAGGGCGTTCCC
EST: gi|67720483|gb|BJ970742.1|BJ970742
EST:     ACAACAAAGGTCGTTTCACCCTGCACAACATCAGTGCGGAGGAGGCGAAG                         TACAAGTTGTGCAAGGTGAGGTCTGCTCAGTTTGGGGATAAGGGCGTTCCC
genomic: ACAACAAAGGTCGTTTCACCCTGCACAACATCAGTGCGGAGGAGGCGAAGgtaagcgcct ... ttcttttcagTACAAGTTGTGCAAGGTGAGGTCTGCTCAGTTTGGGGATAAGGGCGTTCCC
EST: gi|162258264|gb|FC434663.1|FC434663
EST:     ACAACAAAGGTCGTTTCACCCTGCACAACATCAGTGCGGAGGAGGCGAAG                         TACAAGTTGTGCAAGGTGAGGTCTGCTCAGTTTGGGGATAAGGGCGTTCCC
genomic: ACAACAAAGGTCGTTTCACCCTGCACAACATCAGTGCGGAGGAGGCGAAGgtaagcgcct ... ttcttttcagTACAAGTTGTGCAAGGTGAGGTCTGCTCAGTTTGGGGATAAGGGCGTTCCC
EST: gi|208364057|gb|DC947245.1|DC947245
EST:     CCTGCACNACATCAGTGGGGAGGAGGCGAAG                         TACAAGTTGTGCAAGGTGAGGTCTGCTCAGTTTGGGGATAAGGGCGTTCCC
genomic: CCTGCACAACATCAGTGCGGAGGAGGCGAAGgtaagcgcct ... ttcttttcagTACAAGTTGTGCAAGGTGAGGTCTGCTCAGTTTGGGGATAAGGGCGTTCCC
EST: gi|162274814|gb|FC450841.1|FC450841
EST:     ACAACAAAGGTCGTTTCACCCTGCACAACATCAGTGCGGAGGAGGCGAAG                         TCCAAGTTGTGCAAGGTGAGGTCTGCTCAGTTTGGGGATAAGGGCGTTCCC
genomic: ACAACAAAGGTCGTTTCACCCTGCACAACATCAGTGCGGAGGAGGCGAAGgtaagcgcct ... ttcttttcagTACAAGTTGTGCAAGGTGAGGTCTGCTCAGTTTGGGGATAAGGGCGTTCCC
EST: gi|208394810|gb|DC920153.1|DC920153
EST:     ACAACAAAGGTCGTTTCACCCTGCACAACATCAGTGCGGAGGAGGCGAAG                         TACAAGTTGTGCAAGGTGAGGTCTGCTCAGTTTGGGGATAAGGGCGTTCCC
genomic: ACAACAAAGGTCGTTTCACCCTGCACAACATCAGTGCGGAGGAGGCGAAGgtaagcgcct ... ttcttttcagTACAAGTTGTGCAAGGTGAGGTCTGCTCAGTTTGGGGATAAGGGCGTTCCC
EST: gi|37851759|gb|BJ609767.1|BJ609767
EST:     ACAACAAAGGTCGTTTCACCCTGCACAACATCAGTGCGGAGGAGGCGAAG                         TACAAGTTGTGCAAGGTGAGGTCTGCTCAGTTTGGGGATAAGGGCGTTCCC
genomic: ACAACAAAGGTCGTTTCACCCTGCACAACATCAGTGCGGAGGAGGCGAAGgtaagcgcct ... ttcttttcagTACAAGTTGTGCAAGGTGAGGTCTGCTCAGTTTGGGGATAAGGGCGTTCCC
EST: gi|37824548|gb|BJ582614.1|BJ582614
EST:     ACAACAAAGGTCGTTTCACCCTGCACAACATCAGTGCGGAGGAGGCGAAG                         TACAAGTTGTGCAAGGTGAGGTCTGCTCAGTTTGGGGATAAGGGCGTTCCC
genomic: ACAACAAAGGTCGTTTCACCCTGCACAACATCAGTGCGGAGGAGGCGAAGgtaagcgcct ... ttcttttcagTACAAGTTGTGCAAGGTGAGGTCTGCTCAGTTTGGGGATAAGGGCGTTCCC
EST: gi|19789420|gb|BQ041298.1|BQ041298
EST:     ACAACAAAGGTCGTTTCACCCTGCACAACATCAGTGCGGAGGAGGCGAAG                         TACAAGTTGTGCAAGGTGAGGTCTGCTCAGTTTGGGGATAAGGGCGTTCCC
genomic: ACAACAAAGGTCGTTTCACCCTGCACAACATCAGTGCGGAGGAGGCGAAGgtaagcgcct ... ttcttttcagTACAAGTTGTGCAAGGTGAGGTCTGCTCAGTTTGGGGATAAGGGCGTTCCC
EST: gi|37833221|gb|BJ591233.1|BJ591233
EST:     ACAACAAAGGTCGTTTCACCCTGCACAACATCAGTGCGGAGGAGGCGAAG                         TACAAGTTGTGCAAGGTGAGGTCTGCTCAGTTTGGGGATAAGGGCGTTCCC
genomic: ACAACAAAGGTCGTTTCACCCTGCACAACATCAGTGCGGAGGAGGCGAAGgtaagcgcct ... ttcttttcagTACAAGTTGTGCAAGGTGAGGTCTGCTCAGTTTGGGGATAAGGGCGTTCCC
EST: gi|162242259|gb|FC416067.1|FC416067
EST:     ACAACAAAGGTCGTTTCACCCTGCACAACATCAGTGCGGAGGAGGCGAAG                         TACAAGTTGTGCAAGGTGAGGTCTGCTCAGTTTGGGGATAAGGGCGTTCCC
genomic: ACAACAAAGGTCGTTTCACCCTGCACAACATCAGTGCGGAGGAGGCGAAGgtaagcgcct ... ttcttttcagTACAAGTTGTGCAAGGTGAGGTCTGCTCAGTTTGGGGATAAGGGCGTTCCC
EST: gi|208379330|gb|DC918988.1|DC918988
EST:     ACAACAAAGGTCGGTTCACCCTGCACAACATCAGTGCGGAGGAGGCGAAG                         TACAAGTTGTGCAAGGTGAGGTCTGCTCAGTTTGGGGATAAGGGCGTTCCC
genomic: ACAACAAAGGTCGTTTCACCCTGCACAACATCAGTGCGGAGGAGGCGAAGgtaagcgcct ... ttcttttcagTACAAGTTGTGCAAGGTGAGGTCTGCTCAGTTTGGGGATAAGGGCGTTCCC
EST: gi|162150669|gb|FC327565.1|FC327565
EST:     GGTCGTTTCACCCTGCACAACATCAGTGCGGAGGAGGCGAAG                         TACAAGTTGTGCAAGGTGAGGTCTGCTCAGTTTGGGGATAAGGGCGTTCCC
genomic: GGTCGTTTCACCCTGCACAACATCAGTGCGGAGGAGGCGAAGgtaagcgcct ... ttcttttcagTACAAGTTGTGCAAGGTGAGGTCTGCTCAGTTTGGGGATAAGGGCGTTCCC
EST: gi|67726242|gb|BJ976501.1|BJ976501
EST:     ACAACAAAGGTCGTTTCACCCTGCACAACATCAGTGCGGAGGAGGCGAAG                         TACAAGTTGTGCAAGGTGAGGTCTGCTCAGTTTGGGGATAAGGGCGTTCCC
genomic: ACAACAAAGGTCGTTTCACCCTGCACAACATCAGTGCGGAGGAGGCGAAGgtaagcgcct ... ttcttttcagTACAAGTTGTGCAAGGTGAGGTCTGCTCAGTTTGGGGATAAGGGCGTTCCC
EST: gi|67720142|gb|BJ970401.1|BJ970401
EST:     ACAACAAAGGTCGTTTCACCCTGCACAACATCAGTGCGGAGGAGGCGAAG                         TACAAGTTGTGCAAGGTGAGGTCTGCTCAGTTTGGGGATAAGGGCGTTCCC
genomic: ACAACAAAGGTCGTTTCACCCTGCACAACATCAGTGCGGAGGAGGCGAAGgtaagcgcct ... ttcttttcagTACAAGTTGTGCAAGGTGAGGTCTGCTCAGTTTGGGGATAAGGGCGTTCCC
EST: gi|208361532|gb|DC950276.1|DC950276
EST:     ACAACAAAGGTCGTTTCACCCTGCACAACATCAGTGCGGAGGAGGCGAAG                         TACAAGTTGTGCAAGGTGAGGTCTGCTCAGTTTGGGGATAAGGGCGTTCCC
genomic: ACAACAAAGGTCGTTTCACCCTGCACAACATCAGTGCGGAGGAGGCGAAGgtaagcgcct ... ttcttttcagTACAAGTTGTGCAAGGTGAGGTCTGCTCAGTTTGGGGATAAGGGCGTTCCC
EST: gi|208364178|gb|DC947282.1|DC947282
EST:     ACAACAAAGGTCGTTTCANCCTGCACNACATCAGTGCGGAGGAGGCGAAG                         TACAAGTTGTGCAAGGTGAGGTCTGCTCAGTTTGGGGATAAGGGCGTTCCC
genomic: ACAACAAAGGTCGTTTCACCCTGCACAACATCAGTGCGGAGGAGGCGAAGgtaagcgcct ... ttcttttcagTACAAGTTGTGCAAGGTGAGGTCTGCTCAGTTTGGGGATAAGGGCGTTCCC
EST: gi|208367289|gb|DC951249.1|DC951249
EST:     ACAACAAAGGTCGTTTCACCCTGCACAACATCAGTGCGGAGGAGGCGAAG                         TACAAGTTGTGCAAGGTGAGGTCTGCTCAGTTTGGGGATAAGGGCGTTCCC
genomic: ACAACAAAGGTCGTTTCACCCTGCACAACATCAGTGCGGAGGAGGCGAAGgtaagcgcct ... ttcttttcagTACAAGTTGTGCAAGGTGAGGTCTGCTCAGTTTGGGGATAAGGGCGTTCCC
EST: gi|162273105|gb|FC447799.1|FC447799
EST:     ACAACAAAGGTCGTTTCACCCTGCACAACATCAGTGCGGAGGAGGCGAAG                         TACAAGTTGTGCAAGGTGAGGTCTGCTCAGTTTGGGGATAAGGGCGTTCCC
genomic: ACAACAAAGGTCGTTTCACCCTGCACAACATCAGTGCGGAGGAGGCGAAGgtaagcgcct ... ttcttttcagTACAAGTTGTGCAAGGTGAGGTCTGCTCAGTTTGGGGATAAGGGCGTTCCC
EST: gi|67724414|gb|BJ974673.1|BJ974673
EST:     ACAACAAAGGTCGTTTCACCCTGCACAACATCAGTGCGGAGGAGGCGAAG                         TACAAGTTGTGCAAGGTGAGGTCTGCTCAGTTTGGGGATAAGGGCGTTCCC
genomic: ACAACAAAGGTCGTTTCACCCTGCACAACATCAGTGCGGAGGAGGCGAAGgtaagcgcct ... ttcttttcagTACAAGTTGTGCAAGGTGAGGTCTGCTCAGTTTGGGGATAAGGGCGTTCCC
EST: gi|208382538|gb|DC919762.1|DC919762
EST:     ACAACAAAGGTCGTTTCACCCTGCACAACATCAGTGCGGAGGAGGCGAAG                         TACAAGTTGTGCAAGGTGAGGTCTGCTCAGTTTGGGGATAAGGGCGTTCCC
genomic: ACAACAAAGGTCGTTTCACCCTGCACAACATCAGTGCGGAGGAGGCGAAGgtaagcgcct ... ttcttttcagTACAAGTTGTGCAAGGTGAGGTCTGCTCAGTTTGGGGATAAGGGCGTTCCC
EST: gi|162209916|gb|FC386058.1|FC386058
EST:     ACAACAAAGGTCGTTTCACCCTGCACAACATCAGTGCGGAGGAGGCGAAG                         TACAAGTTGTGCAAGGTGAGGTCTGCTCAGTTTGGGGATAAGGGCGTTCCC
genomic: ACAACAAAGGTCGTTTCACCCTGCACAACATCAGTGCGGAGGAGGCGAAGgtaagcgcct ... ttcttttcagTACAAGTTGTGCAAGGTGAGGTCTGCTCAGTTTGGGGATAAGGGCGTTCCC
EST: gi|162222487|gb|FC397208.1|FC397208
EST:     ACAACAAAGGTCGTTTCACCCTGCACAACATCAGTGCGGAGGAGGCGAAG                         TACAAGTTGTGCAAGGTGAGGTCTGCTCAGTTTGGGGATAAGGGCGTTCCC
genomic: ACAACAAAGGTCGTTTCACCCTGCACAACATCAGTGCGGAGGAGGCGAAGgtaagcgcct ... ttcttttcagTACAAGTTGTGCAAGGTGAGGTCTGCTCAGTTTGGGGATAAGGGCGTTCCC
EST: gi|19778892|gb|BQ039373.1|BQ039373
EST:     ACAACAAAGGTCGTTTCACCCTGCACAACATCAGTGCGGAGGAGGCGAAG                         TACAAGTTGTGCAAGGTGAGGTCTGCTCAGTTTGGGGATAAGGGCGTTCCC
genomic: ACAACAAAGGTCGTTTCACCCTGCACAACATCAGTGCGGAGGAGGCGAAGgtaagcgcct ... ttcttttcagTACAAGTTGTGCAAGGTGAGGTCTGCTCAGTTTGGGGATAAGGGCGTTCCC
EST: gi|67720426|gb|BJ970685.1|BJ970685
EST:     ACAACAAAGGTCGTTTCACCCTGCACAACATCAGTGCGGAGGAGGCGAAG                         TACAAGTTGTGCAAGGTGAGGTCTGCTCAGTTTGGGGATAAGGGCGTTCCC
genomic: ACAACAAAGGTCGTTTCACCCTGCACAACATCAGTGCGGAGGAGGCGAAGgtaagcgcct ... ttcttttcagTACAAGTTGTGCAAGGTGAGGTCTGCTCAGTTTGGGGATAAGGGCGTTCCC
EST: gi|208357452|gb|DC953776.1|DC953776
EST:     ACAACAAAGGTCGTTTCACCCTGCACAACATCAGTGCGGAGGAGGCGAAG                         TACAAGTTGTGCAAGGTGAGGTCTGCTCAGTTTGGGGATAAGGGCGTTCCC
genomic: ACAACAAAGGTCGTTTCACCCTGCACAACATCAGTGCGGAGGAGGCGAAGgtaagcgcct ... ttcttttcagTACAAGTTGTGCAAGGTGAGGTCTGCTCAGTTTGGGGATAAGGGCGTTCCC
EST: gi|162276377|gb|FC452133.1|FC452133
EST:     ACAACAAAGGTCGTTTCACCCTGCACAACATCAGTGCGGAGGAGGCGAAG                         TACAAGTTGTGCAAGGTGAGGTCTGCTCAGTTTGGGGATAAGGGCGTTCCC
genomic: ACAACAAAGGTCGTTTCACCCTGCACAACATCAGTGCGGAGGAGGCGAAGgtaagcgcct ... ttcttttcagTACAAGTTGTGCAAGGTGAGGTCTGCTCAGTTTGGGGATAAGGGCGTTCCC
EST: gi|67726804|gb|BJ977063.1|BJ977063
EST:     ACAACAAAGGTCGTTTCACCCTGCACAACATCAGTGCGGAGGAGGCGAAG                         TACAAGTTGTGCAAGGTGAGGTCTGCTCAGTTTGGGGATAAGGGCGTTCCC
genomic: ACAACAAAGGTCGTTTCACCCTGCACAACATCAGTGCGGAGGAGGCGAAGgtaagcgcct ... ttcttttcagTACAAGTTGTGCAAGGTGAGGTCTGCTCAGTTTGGGGATAAGGGCGTTCCC
EST: gi|208392772|gb|DC953669.1|DC953669
EST:     ACAACNAAGGTCGNTTCACCCTGCACAACATCAGTGCGGAGGAGGCGAAG                         TACAAGTTGTGCAAGGTGAGGTCTGCTCAGTTTGGGGATAAGGGCGTTCCC
genomic: ACAACAAAGGTCGTTTCACCCTGCACAACATCAGTGCGGAGGAGGCGAAGgtaagcgcct ... ttcttttcagTACAAGTTGTGCAAGGTGAGGTCTGCTCAGTTTGGGGATAAGGGCGTTCCC
EST: gi|208346081|gb|DC925508.1|DC925508
EST:     CCTGCACAACATCAGTGCGGAGGAGGCGAAG                         TACAAGTTGTGCAAGGTGAGGTCTGCTCAG-TTGGGGATAAGGGCGTTCCC
genomic: CCTGCACAACATCAGTGCGGAGGAGGCGAAGgtaagcgcct ... ttcttttcagTACAAGTTGTGCAAGGTGAGGTCTGCTCAGTTTGGGGATAAGGGCGTTCCC
EST: gi|208395596|gb|DC929011.1|DC929011
EST:     ACAACAAAGGTCGTTTCACCCTGCACAACATCAGTGCGGAGGAGGCGAAG                         TACAAGTTGTGCAAGGTGAGGTCTGCTCAGTTTGGGGATAAGGGCGTTCCC
genomic: ACAACAAAGGTCGTTTCACCCTGCACAACATCAGTGCGGAGGAGGCGAAGgtaagcgcct ... ttcttttcagTACAAGTTGTGCAAGGTGAGGTCTGCTCAGTTTGGGGATAAGGGCGTTCCC
EST: gi|162246270|gb|FC421977.1|FC421977
EST:     ACAACAAAGGTCGTTTCACCCTGCACAACATCAGTGCGGAGGAGGCGAAG                         TACAAGTTGTGCAAGGTGAGGTCTGCTCAGTTTGGGGATAAGGGCGTTCCC
genomic: ACAACAAAGGTCGTTTCACCCTGCACAACATCAGTGCGGAGGAGGCGAAGgtaagcgcct ... ttcttttcagTACAAGTTGTGCAAGGTGAGGTCTGCTCAGTTTGGGGATAAGGGCGTTCCC
EST: gi|162241365|gb|FC416996.1|FC416996
EST:     ACAACAAAGGTCGTTTCACCCTGCACAACATCAGTGCGGAGGAGGCGAAG                         TACAAGTTGTGCAAGGTGAGGTCTGCTCAGTTTGGGGATAAGGGCGTTCCC
genomic: ACAACAAAGGTCGTTTCACCCTGCACAACATCAGTGCGGAGGAGGCGAAGgtaagcgcct ... ttcttttcagTACAAGTTGTGCAAGGTGAGGTCTGCTCAGTTTGGGGATAAGGGCGTTCCC
EST: gi|208363261|gb|DC954405.1|DC954405
EST:     ACNACAAAGGTCG-TTCACCCTGCACAACATCAGTGCGGAGGAGGCGAAG                         TACAAGTTGTGCAAGGTGAGGTCTGCTCAGTTTGGGGATAAGGGCGTTCCC
genomic: ACAACAAAGGTCGTTTCACCCTGCACAACATCAGTGCGGAGGAGGCGAAGgtaagcgcct ... ttcttttcagTACAAGTTGTGCAAGGTGAGGTCTGCTCAGTTTGGGGATAAGGGCGTTCCC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 33 (upstream exon), 35 (downstream exon)
Score: 107

ATGTGATATCCATTGCCAAGACAAACGAGAACTTCCGTTTGTTGTATGACAACAAAGGTCGTTTCACCCTGCACAACATCAGTGCGGAGGAGGCGAAGgtaagcgcct ... ttcttttcagTACAAGTTGTGCAAGGTGAGGTCTGCTCAGTTTGGGGATAAGGGCGTTCCCTACATTACCACTTTCGACGGCCGGACAATCAG




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caagcgtttgtatttatctgtttctaaatttatttataattggatttcttttcagTACAAGTTGTGCAAGGTGAGGTCTGCTCAGTTTGGGGATAAGGGCGTTCCCTACATTACCACTTTCGACGGCCGGACAATCAG
                     ttctaaa  putative branch site (score: 107)
                                            tttcttttc  putative PPT
          tatttatctgtttcta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ttattctggcaagagtattagttgttttgtttggttatcaacccacaagcgtttgtatttatctgtttctaaatttatttataattggatttcttttcagTACAAGTTGTGCAAGGTGAGGTCTGCTCAGTTTGGGGATAAGGGCGTTCCCTACATTACCACTTTCGACGGCCGGACAATCAG

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