Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgtatgataattcgatcatatcaagtttggtccgtcggtatttgagtatacatgtacatataaaggagcacaaaaaatttcaatttactgttacgccacgggtgattctatttacttatcgatctttctggttgcaattgggtgaaattaaaggttatttctaatcgtttttggtgtgctgcagATCGAGTGGTATGAATGTTTGTGCCGGATGTGGTGAATCACTAGGTTTTGGGCGCTTCTTAAGTTGCTTGGGCAAAAACTGGCACCCAAATTGCTTTTGT

Basic information

species Physcomitrella patens
transcript PP1S395_19V6.3
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18343057|gb|BJ175095.1|BJ175095
EST:     CACCGCGACCCTTACGCTTATTCTTCCTCTTACGCCCCTCCTCCATCTAG                         ATCGAGTGGTATGAATGTTTGTGCCGGATGTGGT
genomic: CACCGCGACCCTTACGCTTATTCTTCCTCTTACGCCCCTCCTCCATCTAGgtacgtatga ... tgtgctgcagATCGAGTGGTATGAATGTTTGTGCCGGATGTGGT
EST: gi|100387138|gb|BY951537.1|BY951537
EST:     CACCGCGACCCTTACGCTTATTCTTCCTCTTACGCCCCTCCTCCATCTAG                         ATCGAGTGGTATGAATGTTTGTGCCGGATGTGGTGAATCACTAGGTTTTGG
genomic: CACCGCGACCCTTACGCTTATTCTTCCTCTTACGCCCCTCCTCCATCTAGgtacgtatga ... tgtgctgcagATCGAGTGGTATGAATGTTTGTGCCGGATGTGGTGAATCACTAGGTTTTGG
EST: gi|162191987|gb|FC367200.1|FC367200
EST:     CACCGCGACCCTTACGCTTATTCTTCCTCTTACGCCCCTCCTCCATCTAG                         ATCGAGTGGTATGAATGTTTGTGCCGGATGTGGTGAATCACTAGGTTTTGG
genomic: CACCGCGACCCTTACGCTTATTCTTCCTCTTACGCCCCTCCTCCATCTAGgtacgtatga ... tgtgctgcagATCGAGTGGTATGAATGTTTGTGCCGGATGTGGTGAATCACTAGGTTTTGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggttgcaattgggtgaaattaaaggttatttctaatcgtttttggtgtgctgcagATCGAGTGGTATGAATGTTTGTGCCGGATGTGGTGAATCACTAGGTTTTGGGCGCTTCTTAAGTTGCTTGGGCAAAAACTGGCACCCAAATTGCTTTTGT
                             ttctaat  putative branch site (score: 2)
               aaattaaaggttattt  TA-rich tract