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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tcctacttccctagcttgcagaatctaatgatgttgcatttgctgattcattatatttacaatcagaaagatactcgtttttatagttgtatttttgcagGCATATTGCTGCAGCATGTCCAGTGGAGCCATTATGCCGGAACTGCAAGAAGCCAGGACACATCGCAAGCGAGTGCCGGAGTGAGCCAATCTGCAACAAC

Basic information

species Physcomitrella patens
transcript PP1S391_72V6.2
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67725038|gb|BJ975297.1|BJ975297
EST:     GCTCGCGATTGCCCCAATGCAGCAGTGTGTAACAATTGTGGAGGTTCAGG                         GCATATTGCTGCAGCATGTCCAGTGGAGCCATTATGCCGGAACTGCAAGAA
genomic: GCTCGCGATTGCCCCAATGCAGCAGTGTGTAACAATTGTGGAGGTTCAGGgtatgctgtt ... atttttgcagGCATATTGCTGCAGCATGTCCAGTGGAGCCATTATGCCGGAACTGCAAGAA
EST: gi|162227005|gb|FC402543.1|FC402543
EST:     GCTCGCGATTGCCCCAATGCAGCAGTGTGTAACAATTGTGGAGGTTCAGG                         GCATATTGCTGCAGCATGTCCAGTGGAGCCATTATGCCGGAACTGCAAGAA
genomic: GCTCGCGATTGCCCCAATGCAGCAGTGTGTAACAATTGTGGAGGTTCAGGgtatgctgtt ... atttttgcagGCATATTGCTGCAGCATGTCCAGTGGAGCCATTATGCCGGAACTGCAAGAA
EST: gi|162152368|gb|FC328555.1|FC328555
EST:     GCTCGCGATTGCCCCAATGCAGCAGTGTGTAACAATTGTGGAGGTTCAGG                         GCATATTGCTGCAGCATGTCCAGTGGAGCCATTATGCCGGAACTGCAAGAA
genomic: GCTCGCGATTGCCCCAATGCAGCAGTGTGTAACAATTGTGGAGGTTCAGGgtatgctgtt ... atttttgcagGCATATTGCTGCAGCATGTCCAGTGGAGCCATTATGCCGGAACTGCAAGAA
EST: gi|100396758|gb|BY953812.1|BY953812
EST:     TCGCGATTGCCCCAATGCAGCAGTGTGTAACAATTGGTGGAAGGT-CAGG                         GCATATTGCTGCAGCATGTCCAGTGGAGGCATTATGCCGGAACTGCAAGA
genomic: TCGCGATTGCCCCAATGCAGCAGTGTGTAACAATTG-TGGA-GGTTCAGGgtatgctgtt ... atttttgcagGCATATTGCTGCAGCATGTCCAGTGGAGCCATTATGCCGGAACTGCAAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attcattatatttacaatcagaaagatactcgtttttatagttgtatttttgcagGCATATTGCTGCAGCATGTCCAGTGGAGCCATTATGCCGGAACTGCAAGAAGCCAGGACACATCGCAAGCGAGTGCCGGAGTGAGCCAATCTGCAACAAC
 tgctgat  putative branch site (score: 3)
                                            tattttt  putative PPT
                                tttttatagttgtatt  TA-rich tract