1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tcctacttccctagcttgcagaatctaatgatgttgcatttgctgattcattatatttacaatcagaaagatactcgtttttatagttgtatttttgcagGCATATTGCTGCAGCATGTCCAGTGGAGCCATTATGCCGGAACTGCAAGAAGCCAGGACACATCGCAAGCGAGTGCCGGAGTGAGCCAATCTGCAACAAC
species | Physcomitrella patens |
transcript | PP1S391_72V6.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GCTCGCGATTGCCCCAATGCAGCAGTGTGTAACAATTGTGGAGGTTCAGG GCATATTGCTGCAGCATGTCCAGTGGAGCCATTATGCCGGAAEST: gi|67725038|gb|BJ975297.1|BJ975297
genomic: GCTCGCGATTGCCCCAATGCAGCAGTGTGTAACAATTGTGGAGGTTCAGGgtatgctgtt ... atttttgcagGCATATTGCTGCAGCATGTCCAGTGGAGCCATTATGCCGGAA
EST: GCTCGCGATTGCCCCAATGCAGCAGTGTGTAACAATTGTGGAGGTTCAGG GCATATTGCTGCAGCATGTCCAGTGGAGCCATTATGCCGGAACTGCAAGAAEST: gi|162227005|gb|FC402543.1|FC402543
genomic: GCTCGCGATTGCCCCAATGCAGCAGTGTGTAACAATTGTGGAGGTTCAGGgtatgctgtt ... atttttgcagGCATATTGCTGCAGCATGTCCAGTGGAGCCATTATGCCGGAACTGCAAGAA
EST: GCTCGCGATTGCCCCAATGCAGCAGTGTGTAACAATTGTGGAGGTTCAGG GCATATTGCTGCAGCATGTCCAGTGGAGCCATTATGCCGGAACTGCAAGAAEST: gi|162152368|gb|FC328555.1|FC328555
genomic: GCTCGCGATTGCCCCAATGCAGCAGTGTGTAACAATTGTGGAGGTTCAGGgtatgctgtt ... atttttgcagGCATATTGCTGCAGCATGTCCAGTGGAGCCATTATGCCGGAACTGCAAGAA
EST: GCTCGCGATTGCCCCAATGCAGCAGTGTGTAACAATTGTGGAGGTTCAGG GCATATTGCTGCAGCATGTCCAGTGGAGCCATTATGCCGGAACTGCAAGAAEST: gi|100388813|gb|BY988689.1|BY988689
genomic: GCTCGCGATTGCCCCAATGCAGCAGTGTGTAACAATTGTGGAGGTTCAGGgtatgctgtt ... atttttgcagGCATATTGCTGCAGCATGTCCAGTGGAGCCATTATGCCGGAACTGCAAGAA
EST: GCTCGCGATTGCCCCAATGCAGCAGTGTGTAACAATTGTGGAGGTTCAGG GCATATTGCTGCAGCATGTCCAGTGGAGCCATTATGCCGGAAACTGCAEST: gi|208394232|gb|DC933900.1|DC933900
genomic: GCTCGCGATTGCCCCAATGCAGCAGTGTGTAACAATTGTGGAGGTTCAGGgtatgctgtt ... atttttgcagGCATATTGCTGCAGCATGTCCAGTGGAGCCATTATGCCGGAA-CTGCA
EST: GCTCGCGATTGCCCCAATGCAGCAGTGTGTAACAATTGTGGAGGTTCAGG GCATATTGCTGCAGCATGTCCAGTGGAGCCATTATGCCGGAACTGCAAGAAEST: gi|208378157|gb|DC902630.1|DC902630
genomic: GCTCGCGATTGCCCCAATGCAGCAGTGTGTAACAATTGTGGAGGTTCAGGgtatgctgtt ... atttttgcagGCATATTGCTGCAGCATGTCCAGTGGAGCCATTATGCCGGAACTGCAAGAA
EST: GCTCGCGATTGCCCCAATGCAGCAGTGTGTAACAATTGTGGAGGTTCAGG GCATATTGCTGCAGCATGTCCAGTGGAGCCATTATGCCGGAACTGCAAGAAEST: gi|22133132|gb|BQ827562.1|BQ827562
genomic: GCTCGCGATTGCCCCAATGCAGCAGTGTGTAACAATTGTGGAGGTTCAGGgtatgctgtt ... atttttgcagGCATATTGCTGCAGCATGTCCAGTGGAGCCATTATGCCGGAACTGCAAGAA
EST: GCTCGCGATTGCCCCAATGCAGCAGTGTGTAACAATTGTGGAGGTTCAGG GCATATTGCTGCAGCATGTCCAGTGGAGCCATTATGCCGGAACTGCAAGAA
genomic: GCTCGCGATTGCCCCAATGCAGCAGTGTGTAACAATTGTGGAGGTTCAGGgtatgctgtt ... atttttgcagGCATATTGCTGCAGCATGTCCAGTGGAGCCATTATGCCGGAACTGCAAGAA
attcattatatttacaatcagaaagatactcgtttttatagttgtatttttgcagGCATATTGCTGCAGCATGTCCAGTGGAGCCATTATGCCGGAACTGCAAGAAGCCAGGACACATCGCAAGCGAGTGCCGGAGTGAGCCAATCTGCAACAAC
tgctgat putative branch site (score: 10)
tattttt putative PPT
tttttatagttgtatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcctacttccctagcttgcagaatctaatgatgttgcatttgctgattcattatatttacaatcagaaagatactcgtttttatagttgtatttttgcagGCATATTGCTGCAGCATGTCCAGTGGAGCCATTATGCCGGAACTGCAAGAAGCCAGGACACATCGCAAGCGAGTGCCGGAGTGAGCCAATCTGCAACAAC
- - - - - - - - - - - - - - - -tgttgca