1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tccgggatgaaacgttgtgaaggatagaatacgttgagatgtggaagatgggttggtggtttaaggtaatgggtgtggtgcggtggatttgcgttggtagATATTCGTGGGAGGACTTGACCCAGCGGTTGGGGACGAAGACTTGAGGAACGTGTTTGGGCAATTTGGAGAACTGGTGTATGTGAAGATTCCCGCCGGGA
species | Physcomitrella patens |
transcript | PP1S391_69V6.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGCCCTCTCCGCAGGCGTTCCCCACAGACAACGACCCCAACAATACAACC ATATTCGTGGGAGGACTTGACCCAGCGGTTGGGGACGAAGACTTGAGGAACEST: gi|162209849|gb|FC385991.1|FC385991
genomic: AGCCCTCTCCGCAGGCGTTCCCCACAGACAACGACCCCAACAATACAACCgtaaggcatc ... gcgttggtagATATTCGTGGGAGGACTTGACCCAGCGGTTGGGGACGAAGACTTGAGGAAC
EST: AGCCCTCTCCGCAGGCGTTCCCCACAGACAACGACCCCAACAATACAACC ATATTCGTGGGAGGACTTGACCCAGCGGTTGGGGACGAAGACTTGAGGAACEST: gi|162191668|gb|FC367713.1|FC367713
genomic: AGCCCTCTCCGCAGGCGTTCCCCACAGACAACGACCCCAACAATACAACCgtaaggcatc ... gcgttggtagATATTCGTGGGAGGACTTGACCCAGCGGTTGGGGACGAAGACTTGAGGAAC
EST: AGCCCTCTCCGCAGGCGTTCCCCACAGACAACGACCCCAACAATACAACC ATATTCGTGGGAGGACTTGACCCAGCGGTTGGGGACGAAGACTTGAGGAACEST: gi|162152976|gb|FC329278.1|FC329278
genomic: AGCCCTCTCCGCAGGCGTTCCCCACAGACAACGACCCCAACAATACAACCgtaaggcatc ... gcgttggtagATATTCGTGGGAGGACTTGACCCAGCGGTTGGGGACGAAGACTTGAGGAAC
EST: AGCCCTCTCCGCAGGCGTTCCCCACAGACAACGACCCCAACAATACAACC ATATTCGTGGGAGGACTTGACCCAGCGGTTGGCGACGAAGACTTGAGGAAC
genomic: AGCCCTCTCCGCAGGCGTTCCCCACAGACAACGACCCCAACAATACAACCgtaaggcatc ... gcgttggtagATATTCGTGGGAGGACTTGACCCAGCGGTTGGGGACGAAGACTTGAGGAAC
agatgggttggtggtttaaggtaatgggtgtggtgcggtggatttgcgttggtagATATTCGTGGGAGGACTTGACCCAGCGGTTGGGGACGAAGACTTGAGGAACGTGTTTGGGCAATTTGGAGAACTGGTGTATGTGAAGATTCCCGCCGGGA
tttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tccgggatgaaacgttgtgaaggatagaatacgttgagatgtggaagatgggttggtggtttaaggtaatgggtgtggtgcggtggatttgcgttggtagATATTCGTGGGAGGACTTGACCCAGCGGTTGGGGACGAAGACTTGAGGAACGTGTTTGGGCAATTTGGAGAACTGGTGTATGTGAAGATTCCCGCCGGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA