1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tcttgtcaattacctaaatggatctaattgagggttgacctcataaagttggcttcgaacattttttttatacttcaatgttccttgtttgttggaacagCTTTATGAACTTGCAACGGCTTGCAAAGTGGTGATCTGCTGTCGAGTTGCTCCTTTACAGAAGGCTGGCATTGTTTCCCTCGTCAAACGGAAAGCTGGGA
species | Physcomitrella patens |
transcript | PP1S38_368V6.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TTGATGGGAACAGTTTGGTACATGCCTTAACGTCTGCATTGGAAAAAGAT CTTTATGAACTTGCAACGGCTTGCAAAGTGGTGATCTGCTGTCGAGTTGCTEST: gi|162264922|gb|FC440697.1|FC440697
genomic: TTGATGGGAACAGTTTGGTACATGCCTTAACGTCTGCATTGGAAAAAGATgtaagtgcta ... gttggaacagCTTTATGAACTTGCAACGGCTTGCAAAGTGGTGATCTGCTGTCGAGTTGCT
EST: TTGATGGGAACAGTTTGGTACATGCCTTAACGTCTGCATTGGAAAAAGAT CTTTATGAACTTGCAACGGCTTGCAAAGTGGTGATCTGCTGTCGAGTTGCT
genomic: TTGATGGGAACAGTTTGGTACATGCCTTAACGTCTGCATTGGAAAAAGATgtaagtgcta ... gttggaacagCTTTATGAACTTGCAACGGCTTGCAAAGTGGTGATCTGCTGTCGAGTTGCT
aagttggcttcgaacattttttttatacttcaatgttccttgtttgttggaacagCTTTATGAACTTGCAACGGCTTGCAAAGTGGTGATCTGCTGTCGAGTTGCTCCTTTACAGAAGGCTGGCATTGTTTCCCTCGTCAAACGGAAAGCTGGGA
aacattttttttatac TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcttgtcaattacctaaatggatctaattgagggttgacctcataaagttggcttcgaacattttttttatacttcaatgttccttgtttgttggaacagCTTTATGAACTTGCAACGGCTTGCAAAGTGGTGATCTGCTGTCGAGTTGCTCCTTTACAGAAGGCTGGCATTGTTTCCCTCGTCAAACGGAAAGCTGGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG