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 5'  3'   		2  
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 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ggcaatgtgtgtgcgcatatggacgatggcgaaatctcatgatatcctgcttggatgatgctctctgacagttgatgggttgtttatgtgggcggggcagCTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCCGGGATATCATCATGCGTGAGTTCCGCTCAGGATCTTCCCGGGTGTTGAT

Basic information

species Physcomitrella patens
transcript PP1S383_1V6.3
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S383_1V6.3 (Physcomitrella patens), 3'ss of exon 4
lower sequence: EDP05185 (Chlamydomonas reinhardtii), 3'ss of exon 6
------------------------------------------------------------------------------------------------------ggcaatgtgtgtgcgcatatggacgatggcgaaatctcatgatatcctgct--tggatgatgctct--ctg-----acagttgatgggttgtttat---gtgggcggggca---gCTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCCGGGATATCATCATGCGTGAGTTCCGCTCAGGATCTTCCCGGGTGTTGAT
                                                                                                        |       |||    |  | ||| | ||  |    | || | |  ||||   | || |||| |   |||      || |     ||| |  |       || |  |      |  || || ||||||||||| || || ||||| ||||||||||||||||| || ||| | |||||||| ||||                            
gtgtgggcggggacgcgcggggggggggggcgcctggggatgcgcgatggggaccaaccagcttcatttggcacagccggcaaacttctgagggcagggcggcccggctaacgtgtttgtgggaacggttgcctagcaccctgttgtgttgctaacgaattatgcccatgctgccgatgcaatccgcagGTGGACTGGCTGACGGACAAGATGCGCGAGCGCGACCACACCGTGTCCGCCACCCACGGCGACATGGACCAGAACACGCGCGATGTGATCATGCGCGAGT----------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208379439|gb|DC919041.1|DC919041
EST:     CTTCATCAACACCCGCCGGAAGGTGGACTGGTTGACTGACAAGATGCGCG                         CTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
genomic: CTTCATCAACACCCGCCGGAAGGTGGACTGGTTGACTGACAAGATGCGCGgtaagcaaca ... ggcggggcagCTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
EST: gi|162211806|gb|FC387470.1|FC387470
EST:     CTTCATCAACACCCGCCGGAAGGTGGACTGGTTGACTGACAAGATGCGCG                         CTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
genomic: CTTCATCAACACCCGCCGGAAGGTGGACTGGTTGACTGACAAGATGCGCGgtaagcaaca ... ggcggggcagCTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
EST: gi|208394531|gb|DC953570.1|DC953570
EST:     CTTCATCAACACCCGCCGGAAGGTGGACTGGTTGACTGACAAGATGCGCG                         CTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
genomic: CTTCATCAACACCCGCCGGAAGGTGGACTGGTTGACTGACAAGATGCGCGgtaagcaaca ... ggcggggcagCTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
EST: gi|67697232|gb|BJ957465.1|BJ957465
EST:     CTTCATCAACACCCGCCGGAAGGTGGACTGGTTGACTGACAAGATGCGCG                         CTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
genomic: CTTCATCAACACCCGCCGGAAGGTGGACTGGTTGACTGACAAGATGCGCGgtaagcaaca ... ggcggggcagCTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
EST: gi|162263014|gb|FC439329.1|FC439329
EST:     CTTCATCAACACCCGCCGGAAGGTGGACTGGTTGACTGACAAGATGCGCG                         CTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
genomic: CTTCATCAACACCCGCCGGAAGGTGGACTGGTTGACTGACAAGATGCGCGgtaagcaaca ... ggcggggcagCTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
EST: gi|162155799|gb|FC331828.1|FC331828
EST:     ATCAACACCCGCCGGAAGGTGGACTGGTTGACTGACAAGATGCGCG                         CTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
genomic: ATCAACACCCGCCGGAAGGTGGACTGGTTGACTGACAAGATGCGCGgtaagcaaca ... ggcggggcagCTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
EST: gi|162189203|gb|FC366725.1|FC366725
EST:     CTTCATCAACACCCGCCGGAAGGTGGACTGGTTGACTGACAAGATGCGCG                         CTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
genomic: CTTCATCAACACCCGCCGGAAGGTGGACTGGTTGACTGACAAGATGCGCGgtaagcaaca ... ggcggggcagCTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
EST: gi|208381328|gb|DC919218.1|DC919218
EST:     TTTCATCAACACCCGCCGGAAGGTGGACTGGTTGACTGACAAGATGCGCG                         CTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
genomic: CTTCATCAACACCCGCCGGAAGGTGGACTGGTTGACTGACAAGATGCGCGgtaagcaaca ... ggcggggcagCTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
EST: gi|18332828|gb|BJ164841.1|BJ164841
EST:     CTTCATCAACACCCGCCGGAAGGTGGACTGGTTGACTGACAAGATGCGCG                         CTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
genomic: CTTCATCAACACCCGCCGGAAGGTGGACTGGTTGACTGACAAGATGCGCGgtaagcaaca ... ggcggggcagCTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
EST: gi|67728291|gb|BJ978550.1|BJ978550
EST:     CTTCATCAACACCCGCCGGAAGGTGGACTGGTTGACTGACAAGATGCGCG                         CTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
genomic: CTTCATCAACACCCGCCGGAAGGTGGACTGGTTGACTGACAAGATGCGCGgtaagcaaca ... ggcggggcagCTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
EST: gi|37836680|gb|BJ594688.1|BJ594688
EST:     CTTCATCAACACCCGCCGGAAGGTGGACTGGTTGACTGACAAGATGCGCG                         CTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
genomic: CTTCATCAACACCCGCCGGAAGGTGGACTGGTTGACTGACAAGATGCGCGgtaagcaaca ... ggcggggcagCTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
EST: gi|162195203|gb|FC371426.1|FC371426
EST:     TTCATCAACACCCGCCGGAAGGTGGACTGGTTGACTGANCA-GATGCGCG                         CTCGTGATCACACCGTGTCGGCTACTCACG
genomic: TTCATCAACACCCGCCGGAAGGTGGACTGGTTGACTGA-CAAGATGCGCGgtaagcaaca ... ggcggggcagCTCGTGATCACACCGTGTCGGCTACTCACG
EST: gi|162168614|gb|FC343876.1|FC343876
EST:     CTTCATCAACACCCGCCGGAAGGTGGACTGGTTGACTGACAAGATGCGCG                         CTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
genomic: CTTCATCAACACCCGCCGGAAGGTGGACTGGTTGACTGACAAGATGCGCGgtaagcaaca ... ggcggggcagCTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
EST: gi|162211807|gb|FC387471.1|FC387471
EST:     CTTCATCAACACCCGCCGGAAGGTGGACTGGTTGACTGACAAGATGCGCG                         CTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
genomic: CTTCATCAACACCCGCCGGAAGGTGGACTGGTTGACTGACAAGATGCGCGgtaagcaaca ... ggcggggcagCTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
EST: gi|162162743|gb|FC337797.1|FC337797
EST:     CTTCATCAACACCCGCCGGAAGGTGGACTGGTTGACTGACAAGATGCGCG                         CTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
genomic: CTTCATCAACACCCGCCGGAAGGTGGACTGGTTGACTGACAAGATGCGCGgtaagcaaca ... ggcggggcagCTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
EST: gi|162263015|gb|FC439330.1|FC439330
EST:     CTTCATCAACACCCGCCGGAAGGTGGACTGGTTGACTGACAAGATGCGCG                         CTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
genomic: CTTCATCAACACCCGCCGGAAGGTGGACTGGTTGACTGACAAGATGCGCGgtaagcaaca ... ggcggggcagCTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
EST: gi|162186230|gb|FC362162.1|FC362162
EST:     CTTCATCAACACCCGCCGGAAGGTGGACTGGTTGACTGACAAGATGCGCG                         CTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
genomic: CTTCATCAACACCCGCCGGAAGGTGGACTGGTTGACTGACAAGATGCGCGgtaagcaaca ... ggcggggcagCTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
EST: gi|37826285|gb|BJ584297.1|BJ584297
EST:     CTTCATCAACACCCGCCGGAAGGTGGACTGGTTGACTGACAAGATGCGCG                         CTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
genomic: CTTCATCAACACCCGCCGGAAGGTGGACTGGTTGACTGACAAGATGCGCGgtaagcaaca ... ggcggggcagCTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
EST: gi|37821344|gb|BJ579410.1|BJ579410
EST:     GACTGGTTGACTGACAAGATGCGCG                         CTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
genomic: GACTGGTTGACTGACAAGATGCGCGgtaagcaaca ... ggcggggcagCTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
EST: gi|37833228|gb|BJ591240.1|BJ591240
EST:     CTTCATCAACACCCGCCGGAAGGTGGACTGGTTGACTGACAAGATGCGCG                         CTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
genomic: CTTCATCAACACCCGCCGGAAGGTGGACTGGTTGACTGACAAGATGCGCGgtaagcaaca ... ggcggggcagCTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
EST: gi|208353714|gb|DC922146.1|DC922146
EST:     TTTCATCAACACCCGCCGGAANGTGGACTGGTTGACTGACAAGATGCGCG                         CTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
genomic: CTTCATCAACACCCGCCGGAAGGTGGACTGGTTGACTGACAAGATGCGCGgtaagcaaca ... ggcggggcagCTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
EST: gi|67726704|gb|BJ976963.1|BJ976963
EST:     CTTCATCAACACCCGCCGGAAGGTGGACTGGTTGACTGACAAGATGCGCG                         CTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
genomic: CTTCATCAACACCCGCCGGAAGGTGGACTGGTTGACTGACAAGATGCGCGgtaagcaaca ... ggcggggcagCTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
EST: gi|37824417|gb|BJ582483.1|BJ582483
EST:     GACTGGTTGACTGACAAGATGCGCG                         CTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
genomic: GACTGGTTGACTGACAAGATGCGCGgtaagcaaca ... ggcggggcagCTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
EST: gi|67724845|gb|BJ975104.1|BJ975104
EST:     CTTCATCAACACCCGCCGGAAGGTGGACTGGTTGACTGACAAGATGCGCG                         CTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
genomic: CTTCATCAACACCCGCCGGAAGGTGGACTGGTTGACTGACAAGATGCGCGgtaagcaaca ... ggcggggcagCTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
EST: gi|67727621|gb|BJ977880.1|BJ977880
EST:     CTTCATCAACACCCGCCGGAAGGTGGACTGGTTGACTGACAAGATGCGCG                         CTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
genomic: CTTCATCAACACCCGCCGGAAGGTGGACTGGTTGACTGACAAGATGCGCGgtaagcaaca ... ggcggggcagCTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
EST: gi|67728157|gb|BJ978416.1|BJ978416
EST:     CTTCATCAACACCCGCCGGAAGGTGGACTGGTTGACTGACAAGATGCGCG                         CTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
genomic: CTTCATCAACACCCGCCGGAAGGTGGACTGGTTGACTGACAAGATGCGCGgtaagcaaca ... ggcggggcagCTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
EST: gi|162180442|gb|FC355863.1|FC355863
EST:     CTTCATCAACACCCGCCGGAAGGTGGACTGGTTGACTGACAAGATGCGCG                         CTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
genomic: CTTCATCAACACCCGCCGGAAGGTGGACTGGTTGACTGACAAGATGCGCGgtaagcaaca ... ggcggggcagCTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
EST: gi|18339451|gb|BJ171478.1|BJ171478
EST:     CTTCATCAACACCCGCCGGAAGGTGGACTGGTTGACTGACAAGATGCGCG                         CTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
genomic: CTTCATCAACACCCGCCGGAAGGTGGACTGGTTGACTGACAAGATGCGCGgtaagcaaca ... ggcggggcagCTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
EST: gi|208362032|gb|DC950481.1|DC950481
EST:     CTTCATCAACACCCGCCGGAAGGTGGACTGGTTGACTGACAAGATGCGCG                         CTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
genomic: CTTCATCAACACCCGCCGGAAGGTGGACTGGTTGACTGACAAGATGCGCGgtaagcaaca ... ggcggggcagCTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
EST: gi|208400861|gb|DC925141.1|DC925141
EST:     CTTCATCAACACCCGCCGGAAGGTGGACTGGTTGACTGACAAGATGCGCG                         CTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
genomic: CTTCATCAACACCCGCCGGAAGGTGGACTGGTTGACTGACAAGATGCGCGgtaagcaaca ... ggcggggcagCTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
EST: gi|162189433|gb|FC365447.1|FC365447
EST:     CTTCATCAACACCCGCCGGAAGGTGGACTGGTTGACTGACAAGATGCGCG                         CTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
genomic: CTTCATCAACACCCGCCGGAAGGTGGACTGGTTGACTGACAAGATGCGCGgtaagcaaca ... ggcggggcagCTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
EST: gi|67573845|gb|BJ946669.1|BJ946669
EST:     TTCATCAACACCCGCCGGAAAGGTGGACTGGTTGACTGACAAGATGCGCG                         CTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
genomic: TTCATCAACACCCGCCGG-AAGGTGGACTGGTTGACTGACAAGATGCGCGgtaagcaaca ... ggcggggcagCTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
EST: gi|67720434|gb|BJ970693.1|BJ970693
EST:     CTTCATCAACACCCGCCGGAAGGTGGACTGGTTGACTGACAAGATGCGCG                         CTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
genomic: CTTCATCAACACCCGCCGGAAGGTGGACTGGTTGACTGACAAGATGCGCGgtaagcaaca ... ggcggggcagCTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
EST: gi|37827365|gb|BJ585377.1|BJ585377
EST:     AAGGTGGACTGGTTGACTGACAAGATGCGCG                         CTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
genomic: AAGGTGGACTGGTTGACTGACAAGATGCGCGgtaagcaaca ... ggcggggcagCTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
EST: gi|37826284|gb|BJ584296.1|BJ584296
EST:     CTTCATCAACACCCGCCGGAAGGTGGACTGGTTGACTGACAAGATGCGCG                         CTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
genomic: CTTCATCAACACCCGCCGGAAGGTGGACTGGTTGACTGACAAGATGCGCGgtaagcaaca ... ggcggggcagCTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACA-CC
EST: gi|67723786|gb|BJ974045.1|BJ974045
EST:     CTTCATCAACACCCGCCGGAAGGTGGACTGGTTGACTGACAAGATGCGCG                         CTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
genomic: CTTCATCAACACCCGCCGGAAGGTGGACTGGTTGACTGACAAGATGCGCGgtaagcaaca ... ggcggggcagCTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
EST: gi|162162744|gb|FC337798.1|FC337798
EST:     CTTCATCAACACCCGCCGGAAGGTGGACTGGTTGACTGACAAGATGCGCG                         CTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
genomic: CTTCATCAACACCCGCCGGAAGGTGGACTGGTTGACTGACAAGATGCGCGgtaagcaaca ... ggcggggcagCTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
EST: gi|208386059|gb|DC956575.1|DC956575
EST:     CTTCATCAACACCCGCCGGAAGGTGGACTGGTTGACTNACAAGATGCGCG                         CTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
genomic: CTTCATCAACACCCGCCGGAAGGTGGACTGGTTGACTGACAAGATGCGCGgtaagcaaca ... ggcggggcagCTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
EST: gi|67724893|gb|BJ975152.1|BJ975152
EST:     CTTCATCAACACCCGCCGGAAGGTGGACTGGTTGACTGACAAGATGCGCG                         CTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
genomic: CTTCATCAACACCCGCCGGAAGGTGGACTGGTTGACTGACAAGATGCGCGgtaagcaaca ... ggcggggcagCTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
EST: gi|67725830|gb|BJ976089.1|BJ976089
EST:     CTTCATCAACACCCGCCGGAAGGTGGACTGGTTGACTGACAAGATGCGCG                         CTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
genomic: CTTCATCAACACCCGCCGGAAGGTGGACTGGTTGACTGACAAGATGCGCGgtaagcaaca ... ggcggggcagCTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
EST: gi|37825207|gb|BJ583273.1|BJ583273
EST:     GACTGGTTGACTGACAAGATGCGCG                         CTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
genomic: GACTGGTTGACTGACAAGATGCGCGgtaagcaaca ... ggcggggcagCTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACA-CC
EST: gi|37829362|gb|BJ587374.1|BJ587374
EST:     GGTTGACTGACAAGATGCGCG                         CTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
genomic: GGTTGACTGACAAGATGCGCGgtaagcaaca ... ggcggggcagCTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
EST: gi|67726347|gb|BJ976606.1|BJ976606
EST:     CTTCATCAACACCCGCCGGAAGGTGGACTGGTTGACTGACAAGATGCGCG                         CTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
genomic: CTTCATCAACACCCGCCGGAAGGTGGACTGGTTGACTGACAAGATGCGCGgtaagcaaca ... ggcggggcagCTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cctgcttggatgatgctctctgacagttgatgggttgtttatgtgggcggggcagCTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCCGGGATATCATCATGCGTGAGTTCCGCTCAGGATCTTCCCGGGTGTTGAT
                                  ttgtttat  TA-rich tract