Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ggcaatgtgtgtgcgcatatggacgatggcgaaatctcatgatatcctgcttggatgatgctctctgacagttgatgggttgtttatgtgggcggggcagCTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCCGGGATATCATCATGCGTGAGTTCCGCTCAGGATCTTCCCGGGTGTTGAT

Basic information

species Physcomitrella patens
transcript PP1S383_1V6.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S383_1V6.3 (Physcomitrella patens), 3'ss of exon 4
lower sequence: EDP05185 (Chlamydomonas reinhardtii), 3'ss of exon 6
------------------------------------------------------------------------------------------------------ggcaatgtgtgtgcgcatatggacgatggcgaaatctcatgatatcctgct--tggatgatgctct--ctg-----acagttgatgggttgtttat---gtgggcggggca---gCTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCCGGGATATCATCATGCGTGAGTTCCGCTCAGGATCTTCCCGGGTGTTGAT
                                                                                                        |       |||    |  | ||| | ||  |    | || | |  ||||   | || |||| |   |||      || |     ||| |  |       || |  |      |  || || ||||||||||| || || ||||| ||||||||||||||||| || ||| | |||||||| ||||                            
gtgtgggcggggacgcgcggggggggggggcgcctggggatgcgcgatggggaccaaccagcttcatttggcacagccggcaaacttctgagggcagggcggcccggctaacgtgtttgtgggaacggttgcctagcaccctgttgtgttgctaacgaattatgcccatgctgccgatgcaatccgcagGTGGACTGGCTGACGGACAAGATGCGCGAGCGCGACCACACCGTGTCCGCCACCCACGGCGACATGGACCAGAACACGCGCGATGTGATCATGCGCGAGT----------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208379439|gb|DC919041.1|DC919041
EST:     CTTCATCAACACCCGCCGGAAGGTGGACTGGTTGACTGACAAGATGCGCG                         CTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
genomic: CTTCATCAACACCCGCCGGAAGGTGGACTGGTTGACTGACAAGATGCGCGgtaagcaaca ... ggcggggcagCTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
EST: gi|162211806|gb|FC387470.1|FC387470
EST:     CTTCATCAACACCCGCCGGAAGGTGGACTGGTTGACTGACAAGATGCGCG                         CTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
genomic: CTTCATCAACACCCGCCGGAAGGTGGACTGGTTGACTGACAAGATGCGCGgtaagcaaca ... ggcggggcagCTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
EST: gi|208394531|gb|DC953570.1|DC953570
EST:     CTTCATCAACACCCGCCGGAAGGTGGACTGGTTGACTGACAAGATGCGCG                         CTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
genomic: CTTCATCAACACCCGCCGGAAGGTGGACTGGTTGACTGACAAGATGCGCGgtaagcaaca ... ggcggggcagCTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
EST: gi|67697232|gb|BJ957465.1|BJ957465
EST:     CTTCATCAACACCCGCCGGAAGGTGGACTGGTTGACTGACAAGATGCGCG                         CTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
genomic: CTTCATCAACACCCGCCGGAAGGTGGACTGGTTGACTGACAAGATGCGCGgtaagcaaca ... ggcggggcagCTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
EST: gi|162263014|gb|FC439329.1|FC439329
EST:     CTTCATCAACACCCGCCGGAAGGTGGACTGGTTGACTGACAAGATGCGCG                         CTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
genomic: CTTCATCAACACCCGCCGGAAGGTGGACTGGTTGACTGACAAGATGCGCGgtaagcaaca ... ggcggggcagCTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
EST: gi|162155799|gb|FC331828.1|FC331828
EST:     ATCAACACCCGCCGGAAGGTGGACTGGTTGACTGACAAGATGCGCG                         CTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
genomic: ATCAACACCCGCCGGAAGGTGGACTGGTTGACTGACAAGATGCGCGgtaagcaaca ... ggcggggcagCTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
EST: gi|162189203|gb|FC366725.1|FC366725
EST:     CTTCATCAACACCCGCCGGAAGGTGGACTGGTTGACTGACAAGATGCGCG                         CTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
genomic: CTTCATCAACACCCGCCGGAAGGTGGACTGGTTGACTGACAAGATGCGCGgtaagcaaca ... ggcggggcagCTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
EST: gi|208381328|gb|DC919218.1|DC919218
EST:     TTTCATCAACACCCGCCGGAAGGTGGACTGGTTGACTGACAAGATGCGCG                         CTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
genomic: CTTCATCAACACCCGCCGGAAGGTGGACTGGTTGACTGACAAGATGCGCGgtaagcaaca ... ggcggggcagCTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
EST: gi|18332828|gb|BJ164841.1|BJ164841
EST:     CTTCATCAACACCCGCCGGAAGGTGGACTGGTTGACTGACAAGATGCGCG                         CTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
genomic: CTTCATCAACACCCGCCGGAAGGTGGACTGGTTGACTGACAAGATGCGCGgtaagcaaca ... ggcggggcagCTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
EST: gi|67728291|gb|BJ978550.1|BJ978550
EST:     CTTCATCAACACCCGCCGGAAGGTGGACTGGTTGACTGACAAGATGCGCG                         CTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
genomic: CTTCATCAACACCCGCCGGAAGGTGGACTGGTTGACTGACAAGATGCGCGgtaagcaaca ... ggcggggcagCTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
EST: gi|37836680|gb|BJ594688.1|BJ594688
EST:     CTTCATCAACACCCGCCGGAAGGTGGACTGGTTGACTGACAAGATGCGCG                         CTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
genomic: CTTCATCAACACCCGCCGGAAGGTGGACTGGTTGACTGACAAGATGCGCGgtaagcaaca ... ggcggggcagCTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
EST: gi|162195203|gb|FC371426.1|FC371426
EST:     TTCATCAACACCCGCCGGAAGGTGGACTGGTTGACTGANCA-GATGCGCG                         CTCGTGATCACACCGTGTCGGCTACTCACG
genomic: TTCATCAACACCCGCCGGAAGGTGGACTGGTTGACTGA-CAAGATGCGCGgtaagcaaca ... ggcggggcagCTCGTGATCACACCGTGTCGGCTACTCACG
EST: gi|162168614|gb|FC343876.1|FC343876
EST:     CTTCATCAACACCCGCCGGAAGGTGGACTGGTTGACTGACAAGATGCGCG                         CTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
genomic: CTTCATCAACACCCGCCGGAAGGTGGACTGGTTGACTGACAAGATGCGCGgtaagcaaca ... ggcggggcagCTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
EST: gi|162211807|gb|FC387471.1|FC387471
EST:     CTTCATCAACACCCGCCGGAAGGTGGACTGGTTGACTGACAAGATGCGCG                         CTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
genomic: CTTCATCAACACCCGCCGGAAGGTGGACTGGTTGACTGACAAGATGCGCGgtaagcaaca ... ggcggggcagCTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
EST: gi|162162743|gb|FC337797.1|FC337797
EST:     CTTCATCAACACCCGCCGGAAGGTGGACTGGTTGACTGACAAGATGCGCG                         CTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
genomic: CTTCATCAACACCCGCCGGAAGGTGGACTGGTTGACTGACAAGATGCGCGgtaagcaaca ... ggcggggcagCTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
EST: gi|162263015|gb|FC439330.1|FC439330
EST:     CTTCATCAACACCCGCCGGAAGGTGGACTGGTTGACTGACAAGATGCGCG                         CTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
genomic: CTTCATCAACACCCGCCGGAAGGTGGACTGGTTGACTGACAAGATGCGCGgtaagcaaca ... ggcggggcagCTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
EST: gi|162186230|gb|FC362162.1|FC362162
EST:     CTTCATCAACACCCGCCGGAAGGTGGACTGGTTGACTGACAAGATGCGCG                         CTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
genomic: CTTCATCAACACCCGCCGGAAGGTGGACTGGTTGACTGACAAGATGCGCGgtaagcaaca ... ggcggggcagCTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
EST: gi|37826285|gb|BJ584297.1|BJ584297
EST:     CTTCATCAACACCCGCCGGAAGGTGGACTGGTTGACTGACAAGATGCGCG                         CTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
genomic: CTTCATCAACACCCGCCGGAAGGTGGACTGGTTGACTGACAAGATGCGCGgtaagcaaca ... ggcggggcagCTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
EST: gi|37821344|gb|BJ579410.1|BJ579410
EST:     GACTGGTTGACTGACAAGATGCGCG                         CTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
genomic: GACTGGTTGACTGACAAGATGCGCGgtaagcaaca ... ggcggggcagCTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
EST: gi|37833228|gb|BJ591240.1|BJ591240
EST:     CTTCATCAACACCCGCCGGAAGGTGGACTGGTTGACTGACAAGATGCGCG                         CTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
genomic: CTTCATCAACACCCGCCGGAAGGTGGACTGGTTGACTGACAAGATGCGCGgtaagcaaca ... ggcggggcagCTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
EST: gi|208353714|gb|DC922146.1|DC922146
EST:     TTTCATCAACACCCGCCGGAANGTGGACTGGTTGACTGACAAGATGCGCG                         CTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
genomic: CTTCATCAACACCCGCCGGAAGGTGGACTGGTTGACTGACAAGATGCGCGgtaagcaaca ... ggcggggcagCTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
EST: gi|67726704|gb|BJ976963.1|BJ976963
EST:     CTTCATCAACACCCGCCGGAAGGTGGACTGGTTGACTGACAAGATGCGCG                         CTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
genomic: CTTCATCAACACCCGCCGGAAGGTGGACTGGTTGACTGACAAGATGCGCGgtaagcaaca ... ggcggggcagCTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
EST: gi|37824417|gb|BJ582483.1|BJ582483
EST:     GACTGGTTGACTGACAAGATGCGCG                         CTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
genomic: GACTGGTTGACTGACAAGATGCGCGgtaagcaaca ... ggcggggcagCTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
EST: gi|67724845|gb|BJ975104.1|BJ975104
EST:     CTTCATCAACACCCGCCGGAAGGTGGACTGGTTGACTGACAAGATGCGCG                         CTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
genomic: CTTCATCAACACCCGCCGGAAGGTGGACTGGTTGACTGACAAGATGCGCGgtaagcaaca ... ggcggggcagCTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
EST: gi|67727621|gb|BJ977880.1|BJ977880
EST:     CTTCATCAACACCCGCCGGAAGGTGGACTGGTTGACTGACAAGATGCGCG                         CTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
genomic: CTTCATCAACACCCGCCGGAAGGTGGACTGGTTGACTGACAAGATGCGCGgtaagcaaca ... ggcggggcagCTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
EST: gi|67728157|gb|BJ978416.1|BJ978416
EST:     CTTCATCAACACCCGCCGGAAGGTGGACTGGTTGACTGACAAGATGCGCG                         CTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
genomic: CTTCATCAACACCCGCCGGAAGGTGGACTGGTTGACTGACAAGATGCGCGgtaagcaaca ... ggcggggcagCTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
EST: gi|162180442|gb|FC355863.1|FC355863
EST:     CTTCATCAACACCCGCCGGAAGGTGGACTGGTTGACTGACAAGATGCGCG                         CTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
genomic: CTTCATCAACACCCGCCGGAAGGTGGACTGGTTGACTGACAAGATGCGCGgtaagcaaca ... ggcggggcagCTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
EST: gi|18339451|gb|BJ171478.1|BJ171478
EST:     CTTCATCAACACCCGCCGGAAGGTGGACTGGTTGACTGACAAGATGCGCG                         CTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
genomic: CTTCATCAACACCCGCCGGAAGGTGGACTGGTTGACTGACAAGATGCGCGgtaagcaaca ... ggcggggcagCTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
EST: gi|208362032|gb|DC950481.1|DC950481
EST:     CTTCATCAACACCCGCCGGAAGGTGGACTGGTTGACTGACAAGATGCGCG                         CTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
genomic: CTTCATCAACACCCGCCGGAAGGTGGACTGGTTGACTGACAAGATGCGCGgtaagcaaca ... ggcggggcagCTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
EST: gi|208400861|gb|DC925141.1|DC925141
EST:     CTTCATCAACACCCGCCGGAAGGTGGACTGGTTGACTGACAAGATGCGCG                         CTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
genomic: CTTCATCAACACCCGCCGGAAGGTGGACTGGTTGACTGACAAGATGCGCGgtaagcaaca ... ggcggggcagCTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
EST: gi|162189433|gb|FC365447.1|FC365447
EST:     CTTCATCAACACCCGCCGGAAGGTGGACTGGTTGACTGACAAGATGCGCG                         CTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
genomic: CTTCATCAACACCCGCCGGAAGGTGGACTGGTTGACTGACAAGATGCGCGgtaagcaaca ... ggcggggcagCTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
EST: gi|67573845|gb|BJ946669.1|BJ946669
EST:     TTCATCAACACCCGCCGGAAAGGTGGACTGGTTGACTGACAAGATGCGCG                         CTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
genomic: TTCATCAACACCCGCCGG-AAGGTGGACTGGTTGACTGACAAGATGCGCGgtaagcaaca ... ggcggggcagCTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
EST: gi|67720434|gb|BJ970693.1|BJ970693
EST:     CTTCATCAACACCCGCCGGAAGGTGGACTGGTTGACTGACAAGATGCGCG                         CTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
genomic: CTTCATCAACACCCGCCGGAAGGTGGACTGGTTGACTGACAAGATGCGCGgtaagcaaca ... ggcggggcagCTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
EST: gi|37827365|gb|BJ585377.1|BJ585377
EST:     AAGGTGGACTGGTTGACTGACAAGATGCGCG                         CTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
genomic: AAGGTGGACTGGTTGACTGACAAGATGCGCGgtaagcaaca ... ggcggggcagCTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
EST: gi|37826284|gb|BJ584296.1|BJ584296
EST:     CTTCATCAACACCCGCCGGAAGGTGGACTGGTTGACTGACAAGATGCGCG                         CTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
genomic: CTTCATCAACACCCGCCGGAAGGTGGACTGGTTGACTGACAAGATGCGCGgtaagcaaca ... ggcggggcagCTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACA-CC
EST: gi|67723786|gb|BJ974045.1|BJ974045
EST:     CTTCATCAACACCCGCCGGAAGGTGGACTGGTTGACTGACAAGATGCGCG                         CTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
genomic: CTTCATCAACACCCGCCGGAAGGTGGACTGGTTGACTGACAAGATGCGCGgtaagcaaca ... ggcggggcagCTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
EST: gi|162162744|gb|FC337798.1|FC337798
EST:     CTTCATCAACACCCGCCGGAAGGTGGACTGGTTGACTGACAAGATGCGCG                         CTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
genomic: CTTCATCAACACCCGCCGGAAGGTGGACTGGTTGACTGACAAGATGCGCGgtaagcaaca ... ggcggggcagCTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
EST: gi|208386059|gb|DC956575.1|DC956575
EST:     CTTCATCAACACCCGCCGGAAGGTGGACTGGTTGACTNACAAGATGCGCG                         CTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
genomic: CTTCATCAACACCCGCCGGAAGGTGGACTGGTTGACTGACAAGATGCGCGgtaagcaaca ... ggcggggcagCTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
EST: gi|67724893|gb|BJ975152.1|BJ975152
EST:     CTTCATCAACACCCGCCGGAAGGTGGACTGGTTGACTGACAAGATGCGCG                         CTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
genomic: CTTCATCAACACCCGCCGGAAGGTGGACTGGTTGACTGACAAGATGCGCGgtaagcaaca ... ggcggggcagCTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
EST: gi|67725830|gb|BJ976089.1|BJ976089
EST:     CTTCATCAACACCCGCCGGAAGGTGGACTGGTTGACTGACAAGATGCGCG                         CTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
genomic: CTTCATCAACACCCGCCGGAAGGTGGACTGGTTGACTGACAAGATGCGCGgtaagcaaca ... ggcggggcagCTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
EST: gi|37825207|gb|BJ583273.1|BJ583273
EST:     GACTGGTTGACTGACAAGATGCGCG                         CTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
genomic: GACTGGTTGACTGACAAGATGCGCGgtaagcaaca ... ggcggggcagCTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACA-CC
EST: gi|37829362|gb|BJ587374.1|BJ587374
EST:     GGTTGACTGACAAGATGCGCG                         CTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
genomic: GGTTGACTGACAAGATGCGCGgtaagcaaca ... ggcggggcagCTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
EST: gi|67726347|gb|BJ976606.1|BJ976606
EST:     CTTCATCAACACCCGCCGGAAGGTGGACTGGTTGACTGACAAGATGCGCG                         CTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC
genomic: CTTCATCAACACCCGCCGGAAGGTGGACTGGTTGACTGACAAGATGCGCGgtaagcaaca ... ggcggggcagCTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 34 (downstream exon)
Score: 22

GACACCCTGTGCGACCTGTACGAAACTTTGGCGATCACCCAGAGTGTGATCTTCATCAACACCCGCCGGAAGGTGGACTGGTTGACTGACAAGATGCGCGgtaagcaaca ... ggcggggcagCTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCCGGGATATCATCATGCGTGAGTTCCGCTCAGGATCTTCCCGGGTGTTGAT




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cctgcttggatgatgctctctgacagttgatgggttgtttatgtgggcggggcagCTCGTGATCACACCGTGTCGGCTACTCACGGAGACATGGACCAGAACACCCGGGATATCATCATGCGTGAGTTCCGCTCAGGATCTTCCCGGGTGTTGAT
                                  ttgtttat  TA-rich tract