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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaactgagtttgcatgatattttctacgttggacgtggtaaatattgaacttcttttcagttagcagtcggaatttgagtatgtttcgagaggttggttaattcggtgtttgcacatattgttctttctgtggtgcagATGTGGATCGCGAAATCAGAGTACGACGAGTCAGGTCCATCAATTGTGCATAGGAAGTGTTTCTAGGTAAGATGTATGTACCGCTTGACTTTTTCATGAC

Basic information

species Physcomitrella patens
transcript PP1S372_38V6.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S372_38V6.1 (Physcomitrella patens), 3'ss of exon 4
lower sequence: LOC_Os03g50885.1 (Oryza sativa), 3'ss of exon 3
gtaaactgagtttgcatgatattttctacgttggacgtggtaaatattgaacttcttttcagttagcagtcggaatttgagtatgtttcgagaggttggttaattcggtgtttgcacatattgttctttctgtggtgcagATGTGGATCGCGAAATCAGAGTACGACGAGTCAGGTCCATCAATTGTGCATAGGAAGTGTTTCTAGGT---AAGATGTATGTACCGCTTGACTTTTTCATGAC
                                       ||||||||  || | |         |||| |       || || |   ||  ||  ||| | ||||   || || || || |||  ||| | ||  ||||||||||||| || ||  | |||||||||||||| || ||||| |||||||| ||||| || |||||  |     ||   | | |  |||   |        |  
---------------------------------------gtaaatatacaaatgc---------agcaatgtag---tgtgtttacctcatgaacttgatcaatt---tgcttaca-atgttg--cttgccgt--tgcagATGTGGATTGCCAAGGCTGAGTACGACGAGTCTGGCCCATCCATTGTGCACAGGAAATGCTTCTAATTCTTCGGACCCAAGAAT-GCTAAGCCAAGAGGAG--

upper sequence: PP1S372_38V6.1 (Physcomitrella patens), 3'ss of exon 4
lower sequence: GLYMA19G00850.1 (Glycine max), 3'ss of exon 3
gtaaactgagtttgcatgatattttctacgttggacgtggtaaatattgaacttcttttcagttagcagtcggaatttgagtatgtttcgagaggttggttaattcggtgtttgcacatattgttctttctgtggtgcagATGTGGATCGCGAAATCAGAGTACGACGAGTCAGGTCCATCAATTGTGCATAGGAAGTGTTTCTAGGTAAGATGTATGTACCGCTTGACTTTTTCATGAC-----
                                            | ||    ||||||    | |  | |      || | |||   |    | | | | ||||           ||| | |||   ||     |||||||||||||| |||||  |||||||||||||||| || ||||||||||| ||||| ||||| |||||  |    ||| ||    | | |  || || | ||      
-----------------------------------------gtctgtttctgttctttaatatgactaattaactattaactattgctttgaatgcttgctaatg--------atacaaactgtcgcttg---agtgcagATGTGGATTGCGAAGGCAGAGTACGACGAGTCTGGACCATCAATTGTTCATAGAAAGTGCTTCTAAAT----TGTTTG-GTTGATAGGGTTATTGAAGAAAAAGA

upper sequence: PP1S372_38V6.1 (Physcomitrella patens), 3'ss of exon 4
lower sequence: GLYMA05G09290.3 (Glycine max), 3'ss of exon 4
gtaaactgagtttgcatgatattttctacgttggacgtggtaaatattgaacttcttttcagttagcagtcggaatttgagtatgtttcgagaggttggttaattcggtgtttgcacatattgttctttctgtggtgcagATGTGGATCGCGAAATCAGAGTACGACGAGTCAGGTCCATCAATTGTGCATAGGAAGTGTTTCTAGGTAAGATGTATGTACCGCTTGACTTTTTCATGAC-----
                                               |    |||| |||  |||  | |    | |  | |||   |    | | | | ||||           ||| ||| |   ||     |||||||||||||| |||||  |||||||||||||||| || ||||||||||| ||||| ||||| |||||  |    ||| || | |  | |  || || | ||      
----------------------------------------------gtatgtttctgttct-ttaata-tgattaatgaactattgctttgaatgcttgctaatg--------atacaaattatcgcttg---agtgcagATGTGGATTGCGAAGGCAGAGTACGACGAGTCTGGACCATCAATTGTTCATAGAAAGTGCTTCTAAAT----TGTTTG-AGCAATAGGGTTATTGAAGAAAAAGA

upper sequence: PP1S372_38V6.1 (Physcomitrella patens), 3'ss of exon 4
lower sequence: GLYMA18G52780.1 (Glycine max), 3'ss of exon 3
gtaaactgagtttgcatgatattttctacgttggacgtggtaaatattgaacttcttttcagttagcagtcggaatttgagtatgtttcgagaggttggttaattcggtgtttgca--catattgttctttctgtggtgcagATGTGGATCGCGAAATCAGAGTACGACGAGTCAGGTCCATCAATTGTGCATAGGAAGTGTTTCTAGGTAAGATGTATGTACCGCTTGACTTTTTCATGAC
                                |   ||  |     || |   | ||| | | |     | ||||| | |   ||||  ||||   |   |  |||  || |   |   | |   || | | |   |||||||||||||| || ||  |||| || |||||||| ||||||||||||||||| || ||||| |||||                                   
--------------------------------gtttgttctcttcctttattctttttcctgcttc---ttggaatgttatgttgttgtgagatagtacattcttctatgataataatgacacacttttgttttgagtgcagATGTGGATTGCAAAGGCAGAATATGACGAGTCTGGTCCATCAATTGTGCACAGAAAGTGCTTCTAA----------------------------------

upper sequence: PP1S372_38V6.1 (Physcomitrella patens), 3'ss of exon 4
lower sequence: GLYMA13G41060.1 (Glycine max), 3'ss of exon 3
gtaaactgagtttgcatgatattttctacgttggacgtggtaaatat-tgaacttcttttcagttagcagtcggaatttgagtatgtttcgagaggttggttaattcggtgtttgcacatattgttctttctgtggtgcagATGTGGATCGCGAAATCAGAGTACGACGAGTCAGGTCCATCAATTGTGCATAGGAAGTGTTTCTAGGTAAGATGTATGTACCGCTTGACTTTTTCATGAC
                                     |  |  || | || ||| |   |            |   |||   |||| |       || ||   |||   || |    ||  ||||| ||   |   ||||||||||||| |||||  |||||||||| ||||| ||||| |||||||| || ||||| || || |                                    
-------------------------------------tcatgcatttgtgcactccccctagaaattagaatgttgttttgatatggtcaatttagtagggatatt-aatgatgaggcac-ttgtttttg--gaaatgcagATGTGGATTGCGAAGGCAGAGTACGATGAGTCCGGTCCTTCAATTGTACACAGGAAATGCTTTTGA----------------------------------

upper sequence: PP1S372_38V6.1 (Physcomitrella patens), 3'ss of exon 4
lower sequence: GLYMA02G10170.1 (Glycine max), 3'ss of exon 4
gtaaactgagtttgcatgatattttctacgttggacgtggtaaatattgaacttcttttcagttagcagtcggaatttgagtatgtttcgagag--gttggttaattc----ggtgtttgcacatattgttctttctgtggtgcagATGTGGATCGCGAAATCAGAGTACGACGAGTCAGGTCCATCAATTGTGCATAGGAAGTGTTTCTAGGTAAGATGTATGTACCGCTTGACTTTTTCATGAC----
                                       ||   |  |   | | ||||    |     | ||||| | |   | |   ||||    ||  |  || |      |  |  |||  | |||| |||     |||||||||||||| || ||  |||| || ||||| || ||||||||||||||||| || ||||| |||||       ||| |  |  | | |  || || | |      
---------------------------------------gtttgttctcttcattttttttcctgcttcttggaatgttatgttatcgtgagatacattcttctatgctaataataatgacacgaactgttgttttga--gtgcagATGTGGATTGCAAAGGCAGAATATGACGAATCTGGTCCATCAATTGTGCACAGAAAGTGCTTCTAAAC----TGTTTCGATAGATAGGGTTATTGAAGGGAAAG

upper sequence: PP1S372_38V6.1 (Physcomitrella patens), 3'ss of exon 4
lower sequence: Vv13s0019g01240.t01 (Vitis vinifera), 3'ss of exon 3
gtaaactgagtttgcatgatattttctacgttggacgtggtaaatattgaacttcttttcagttagcagtcggaatttgagtatgtttcgagaggttggttaa-ttcggt-gtttgcacatattgttctttctgtg-gtgcagATGTGGATCGCGAAATCAGAGTACGACGAGTCAGGTCCATCAATTGTGCATAGGAAGTGTTTCTAGGTAAG-ATGTATGTACCGCTTGACTTTTTCATGAC
                                               |   ||||||||| |  |  | |    || || | ||| ||| |   ||   | |  || | | ||||     |   || | || | || |||||||||||||| || ||  | ||||| || ||||| || |||||||| ||||||||||| ||||||||  |    | | ||       | ||       | |  
----------------------------------------------gtttgcttcttttctgcaaagattt---atatgtgaatgattctaaccgtgaatcatctttgatagtttctgattggagtgcattttttgagtgcagATGTGGATAGCAAAGGCGGAGTATGATGAGTCTGGGCCATCAATCGTGCATAGGAAATGTTTCTAATTGTTCAAGAATAGGATCATGGAAGAAAGGAAGC-

upper sequence: PP1S372_38V6.1 (Physcomitrella patens), 3'ss of exon 4
lower sequence: EFJ35077 (Selaginella moellendorffii), 3'ss of exon 3
gtaaactgagtttgcatgatattttctacgttggacgtggtaaatattgaacttcttttcagttagcagtcggaatttgagtatgtttcgagaggttggttaattcggtgtttgcacatattgttctttctgtggtgcagATGTGGATCGCGAAATCAGAGTACGACGAGTCAGGTCCATCAATTGTGCATAGGAAGTGTTTCTAGGTAAGATGTATGTACCGCTTGACTTTTTCATGAC
                                                                        | |    |  ||  ||      |||  |    || |   |||    | || |||||| |     |||||||||||| || || || |||||||| ||||| |||||||| |||||||| || ||||| ||||||                                  
------------------------------------------------------------------------gtaccacaacattcttttgctcgtttttcttatcagc-cttgtttttctttttctttttt---cgcagATGTGGATTGCAAAGTCCGAGTACGATGAGTCGGGTCCATCGATTGTGCACAGAAAGTGCTTCTAG----------------------------------

upper sequence: PP1S372_38V6.1 (Physcomitrella patens), 3'ss of exon 4
lower sequence: EFJ17401 (Selaginella moellendorffii), 3'ss of exon 3
gtaaactgagtttgcatgatattttctacgttggacgtggtaaatattgaacttcttttcagttagcagtcggaatttgagtatgtttcgagaggttggttaattcggtgtttgcacatattgttctttctgtggtgcagATGTGGATCGCGAAATCAGAGTACGACGAGTCAGGTCCATCAATTGTGCATAGGAAGTGTTTCTAGGTAAGATGTATGTACCGCTTGACTTTTTCATGAC
                                                                        | |    |  ||  ||      |||  |    || |   |||    | || || ||  | |   |||||||||||| || || || |||||||| ||||| |||||||| |||||||| || ||||| ||||||                                  
------------------------------------------------------------------------gtaccacaacattcttttgctcgtttttcttatcagc-cttgt---ttttctttttcgtttctcgcagATGTGGATTGCAAAGTCCGAGTACGATGAGTCGGGTCCATCGATTGTGCACAGAAAGTGCTTCTAG----------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208387193|gb|DC945492.1|DC945492
EST:     GCGTGTGGATCGGAGGCTCCATCTTGGCATCCCTCAGCACCTTCCAGCAG                         ATGTGGATCGCGAAATCAGAGTACGACGAGTCAGGTCCATCAATTGTGCAT
genomic: GCGTGTGGATCGGAGGCTCCATCTTGGCATCCCTCAGCACCTTCCAGCAGgtaaactgag ... tgtggtgcagATGTGGATCGCGAAATCAGAGTACGACGAGTCAGGTCCATCAATTGTGCAT
EST: gi|208369931|gb|DC944269.1|DC944269
EST:     GCGTGTGGATCGGAGGCTCCATCTTGGCATCCCTCAGCACCTTCCAGCAG                         ATGTGGATCGCGAAATCAGAGTACGACGAGTCAGGTCCATCAATTGTGCAT
genomic: GCGTGTGGATCGGAGGCTCCATCTTGGCATCCCTCAGCACCTTCCAGCAGgtaaactgag ... tgtggtgcagATGTGGATCGCGAAATCAGAGTACGACGAGTCAGGTCCATCAATTGTGCAT
EST: gi|162233593|gb|FC409352.1|FC409352
EST:     GCGTGTGGATCGGAGGCTCCATCTTGGCATCCCTCAGCACCTTCCAGCAG                         ATGTGGATCGCGAAATCAGAGTACGACGAGTCAGGTCCATCAATTGTGCAT
genomic: GCGTGTGGATCGGAGGCTCCATCTTGGCATCCCTCAGCACCTTCCAGCAGgtaaactgag ... tgtggtgcagATGTGGATCGCGAAATCAGAGTACGACGAGTCAGGTCCATCAATTGTGCAT
EST: gi|67725926|gb|BJ976185.1|BJ976185
EST:     GCGTGTGGATCGGAGGCTCCATCTTGGCATCCCTCAGCACCTTCCAGCAG                         ATGTGGATCGCGAAATCAGAGTACGACGAGTCAGGTCCATCAATTGTGCAT
genomic: GCGTGTGGATCGGAGGCTCCATCTTGGCATCCCTCAGCACCTTCCAGCAGgtaaactgag ... tgtggtgcagATGTGGATCGCGAAATCAGAGTACGACGAGTCAGGTCCATCAATTGTGCAT
EST: gi|208371825|gb|DC951831.1|DC951831
EST:     GCGTGTGGATCGGAGGCTCCATCTTGGCATCCCTCAGCACCTTCCAGCAG                         ATGTGGATCGCGAAATCAGAGTACGACGAGTCAGGTCCATCAATTGTGCAT
genomic: GCGTGTGGATCGGAGGCTCCATCTTGGCATCCCTCAGCACCTTCCAGCAGgtaaactgag ... tgtggtgcagATGTGGATCGCGAAATCAGAGTACGACGAGTCAGGTCCATCAATTGTGCAT
EST: gi|208361914|gb|DC953964.1|DC953964
EST:     GCGTGTGGATCGGAGGCTCCATCTTGGCATCCCTCAGCACCTTCCAGCAG                         ATGTGGATCGCGAAATCAGAGTACGACGAGTCAGGTCCATCAATTGTGCAT
genomic: GCGTGTGGATCGGAGGCTCCATCTTGGCATCCCTCAGCACCTTCCAGCAGgtaaactgag ... tgtggtgcagATGTGGATCGCGAAATCAGAGTACGACGAGTCAGGTCCATCAATTGTGCAT
EST: gi|67726435|gb|BJ976694.1|BJ976694
EST:     GCGTGTGGATCGGAGGCTCCATCTTGGCATCCCTCAGCACCTTCCAGCAG                         ATGTGGATCGCGAAATCAGAGTACGACGAGTCAGGTCCATCAATTGTGCAT
genomic: GCGTGTGGATCGGAGGCTCCATCTTGGCATCCCTCAGCACCTTCCAGCAGgtaaactgag ... tgtggtgcagATGTGGATCGCGAAATCAGAGTACGACGAGTCAGGTCCATCAATTGTGCAT
EST: gi|162156865|gb|FC333019.1|FC333019
EST:     GCGTGTGGATCGGAGGCTCCATCTTGGCATCCCTCAGCACCTTCCAGCAG                         ATGTGGATCGCGAAATCAGAGTACGACGAGTCAGGTCCATCAATTGTGCAT
genomic: GCGTGTGGATCGGAGGCTCCATCTTGGCATCCCTCAGCACCTTCCAGCAGgtaaactgag ... tgtggtgcagATGTGGATCGCGAAATCAGAGTACGACGAGTCAGGTCCATCAATTGTGCAT
EST: gi|67722383|gb|BJ972642.1|BJ972642
EST:     GCGTGTGGATCGGAGGCTCCATCTTGGCATCCCTCAGCACCTTCCAGCAG                         ATGTGGATCGCGAAATCAGAGTACGACGAGTCAGGTCCATCAATTGTGCAT
genomic: GCGTGTGGATCGGAGGCTCCATCTTGGCATCCCTCAGCACCTTCCAGCAGgtaaactgag ... tgtggtgcagATGTGGATCGCGAAATCAGAGTACGACGAGTCAGGTCCATCAATTGTGCAT
EST: gi|208348387|gb|DC917016.1|DC917016
EST:     GCGTGTGGATCGGAGGCTCCATCTTGGCATCCCTCAGCACCTTCCAGCAG                         ATGTGGATCGCGAAATCAGAGTACGACGAGTCAGGTCCATCAATTGTGCAT
genomic: GCGTGTGGATCGGAGGCTCCATCTTGGCATCCCTCAGCACCTTCCAGCAGgtaaactgag ... tgtggtgcagATGTGGATCGCGAAATCAGAGTACGACGAGTCAGGTCCATCAATTGTGCAT
EST: gi|162165769|gb|FC341730.1|FC341730
EST:     GCGTGTGGATCGGAGGCTCCATCTTGGCATCCCTCAGCACCTTCCAGCAG                         ATGTGGATCGCGAAATCAGAGTACGACGAGTCAGGTCCATCAATTGTGCAT
genomic: GCGTGTGGATCGGAGGCTCCATCTTGGCATCCCTCAGCACCTTCCAGCAGgtaaactgag ... tgtggtgcagATGTGGATCGCGAAATCAGAGTACGACGAGTCAGGTCCATCAATTGTGCAT
EST: gi|162199355|gb|FC374021.1|FC374021
EST:     GCGTGTGGATCGGAGGCTCCATCTTGGCATCCCTCAGCACCTTCCAGCAG                         ATGTGGATCGCGAAATCAGAGTACGACGAGTCAGGTCCATCAATTGTGCAT
genomic: GCGTGTGGATCGGAGGCTCCATCTTGGCATCCCTCAGCACCTTCCAGCAGgtaaactgag ... tgtggtgcagATGTGGATCGCGAAATCAGAGTACGACGAGTCAGGTCCATCAATTGTGCAT
EST: gi|208373992|gb|DC944725.1|DC944725
EST:     GCGTGTGGATCGGAGGCTCCATCTTGGCATCCCTCAGCACCTTCCAGCAG                         ATGTGGATCGCGAAATCAGAGTACGACGAGTCAGGTCCATCAATTGTGCAT
genomic: GCGTGTGGATCGGAGGCTCCATCTTGGCATCCCTCAGCACCTTCCAGCAGgtaaactgag ... tgtggtgcagATGTGGATCGCGAAATCAGAGTACGACGAGTCAGGTCCATCAATTGTGCAT
EST: gi|208386549|gb|DC956869.1|DC956869
EST:     GCGTGTGGATCGGAGGCTCCATCTTGGCATCCCTCAGCACCTTCCAGCAG                         ATGTGGATCGCGAAATCAGAGTACGACGAGTCAGGTCCATCAATTGTGCAT
genomic: GCGTGTGGATCGGAGGCTCCATCTTGGCATCCCTCAGCACCTTCCAGCAGgtaaactgag ... tgtggtgcagATGTGGATCGCGAAATCAGAGTACGACGAGTCAGGTCCATCAATTGTGCAT
EST: gi|162190123|gb|FC365865.1|FC365865
EST:     GCGTGTGGATCGGAGGCTCCATCTTGGCATCCCTCAGCACCTTCCAGCAG                         ATGTGGATCGCGAAATCAGAGTACGACGAGTCAGGTCCATCAATTGTGCAT
genomic: GCGTGTGGATCGGAGGCTCCATCTTGGCATCCCTCAGCACCTTCCAGCAGgtaaactgag ... tgtggtgcagATGTGGATCGCGAAATCAGAGTACGACGAGTCAGGTCCATCAATTGTGCAT
EST: gi|67726610|gb|BJ976869.1|BJ976869
EST:     GCGTGTGGATCGGAGGCTCCATCTTGGCATCCCTCAGCACCTTCCAGCAG                         ATGTGGATCGCGAAATCAGAGTACGACGAGTCAGGTCCATCAATTGTGCAT
genomic: GCGTGTGGATCGGAGGCTCCATCTTGGCATCCCTCAGCACCTTCCAGCAGgtaaactgag ... tgtggtgcagATGTGGATCGCGAAATCAGAGTACGACGAGTCAGGTCCATCAATTGTGCAT
EST: gi|162169097|gb|FC345987.1|FC345987
EST:     GCGTGTGGATCGGAGGCTCCATCTTGGCATCCCTCAGCACCTTCCAGCAG                         ATGTGGATCGCGAAATCAGAGTACGACGAGTCAGGTCCATCAATTGTGCAT
genomic: GCGTGTGGATCGGAGGCTCCATCTTGGCATCCCTCAGCACCTTCCAGCAGgtaaactgag ... tgtggtgcagATGTGGATCGCGAAATCAGAGTACGACGAGTCAGGTCCATCAATTGTGCAT
EST: gi|18339631|gb|BJ171658.1|BJ171658
EST:     GCGTGTGGATCGGAGGCTCCATCTTGGCATCCCTCAGCACCTTCCAGCAG                         ATGTGGATCGCGAAATCAGAGTACGACGAGTCAGGTCCATCAATTGTGCAT
genomic: GCGTGTGGATCGGAGGCTCCATCTTGGCATCCCTCAGCACCTTCCAGCAGgtaaactgag ... tgtggtgcagATGTGGATCGCGAAATCAGAGTACGACGAGTCAGGTCCATCAATTGTGCAT
EST: gi|37836970|gb|BJ594978.1|BJ594978
EST:     GCGTGTGGATCGGAGGCTCCATCTTGGCATCCCTCAGCACCTTCCAGCAG                         ATGTGGATCGCGAAATCAGAGTACGACGAGTCAGGTCCATCAATTGTGCAT
genomic: GCGTGTGGATCGGAGGCTCCATCTTGGCATCCCTCAGCACCTTCCAGCAGgtaaactgag ... tgtggtgcagATGTGGATCGCGAAATCAGAGTACGACGAGTCAGGTCCATCAATTGTGCAT
EST: gi|67723780|gb|BJ974039.1|BJ974039
EST:     GCGTGTGGATCGGAGGCTCCATCTTGGCATCCCTCAGCACCTTCCAGCAG                         ATGTGGATCGCGAAATCAGAGTACGACGAGTCAGGTCCATCAATTGTGCAT
genomic: GCGTGTGGATCGGAGGCTCCATCTTGGCATCCCTCAGCACCTTCCAGCAGgtaaactgag ... tgtggtgcagATGTGGATCGCGAAATCAGAGTACGACGAGTCAGGTCCATCAATTGTGCAT
EST: gi|162250557|gb|FC428460.1|FC428460
EST:     GCGTGTGGATCGGAGGCTCCATCTTGGCATCCCTCAGCACCTTCCAGCAG                         ATGTGGATCGCGAAATCAGAGTACGACGAGTCAGGTCCATCAATTGTGCAT
genomic: GCGTGTGGATCGGAGGCTCCATCTTGGCATCCCTCAGCACCTTCCAGCAGgtaaactgag ... tgtggtgcagATGTGGATCGCGAAATCAGAGTACGACGAGTCAGGTCCATCAATTGTGCAT
EST: gi|208373331|gb|DC948591.1|DC948591
EST:     GCGTGTGGATCGGAGGCTCCATCTTGGCATCCCTCAGCACCTTCCAGCAG                         ATGTGGATCGCGAAATCAGAGTACGACGAGTCAGGTCCATCAATTGTGCAT
genomic: GCGTGTGGATCGGAGGCTCCATCTTGGCATCCCTCAGCACCTTCCAGCAGgtaaactgag ... tgtggtgcagATGTGGATCGCGAAATCAGAGTACGACGAGTCAGGTCCATCAATTGTGCAT
EST: gi|208372684|gb|DC952571.1|DC952571
EST:     GCGTGTGGATCGGAGGCTCCATCTTGGCATCCCTCAGCACCTTCCAGCAG                         ATGTGGATCGCGAAATCAGAGTACGACGAGTCAGGTCCATCAATTGTGCAT
genomic: GCGTGTGGATCGGAGGCTCCATCTTGGCATCCCTCAGCACCTTCCAGCAGgtaaactgag ... tgtggtgcagATGTGGATCGCGAAATCAGAGTACGACGAGTCAGGTCCATCAATTGTGCAT
EST: gi|208371779|gb|DC951653.1|DC951653
EST:     GCGTGTGGATCGGAGGCTCCATCTTGGCATCCCTCAGCACCTTCCAGCAG                         ATGTGGATCGCGAAATCAGAGTACGACGAGTCAGGTCCATCAATTGTGCAT
genomic: GCGTGTGGATCGGAGGCTCCATCTTGGCATCCCTCAGCACCTTCCAGCAGgtaaactgag ... tgtggtgcagATGTGGATCGCGAAATCAGAGTACGACGAGTCAGGTCCATCAATTGTGCAT
EST: gi|162173175|gb|FC349242.1|FC349242
EST:     GCGTGTGGATCGGAGGCTCCATCTTGGCATCCCTCAGCACCTTCCAGCAG                         ATGTGGATCGCGAAATCAGAGTACGACGAGTCAGGTCCATCAATTGTGCAT
genomic: GCGTGTGGATCGGAGGCTCCATCTTGGCATCCCTCAGCACCTTCCAGCAGgtaaactgag ... tgtggtgcagATGTGGATCGCGAAATCAGAGTACGACGAGTCAGGTCCATCAATTGTGCAT
EST: gi|208363072|gb|DC957999.1|DC957999
EST:     GCGTGTGGATCGGAGGCTCCATCTTGGCATCCCTCAGCACCTTCCAGCAG                         ATGTGGATCGCGAAATCAGAGTACGACGAGTCAGGTCCATCAATTGTGCAT
genomic: GCGTGTGGATCGGAGGCTCCATCTTGGCATCCCTCAGCACCTTCCAGCAGgtaaactgag ... tgtggtgcagATGTGGATCGCGAAATCAGAGTACGACGAGTCAGGTCCATCAATTGTGCAT
EST: gi|208354533|gb|DC953883.1|DC953883
EST:     GCGTGTGGATCGGAGGCTCCATCTTGGCATCCCTCAGCACCTTCCAGCAG                         ATGTGGATCGCGAAATCAGAGTACGACGAGTCAGGTCCATCAATTGTGCAT
genomic: GCGTGTGGATCGGAGGCTCCATCTTGGCATCCCTCAGCACCTTCCAGCAGgtaaactgag ... tgtggtgcagATGTGGATCGCGAAATCAGAGTACGACGAGTCAGGTCCATCAATTGTGCAT
EST: gi|208351453|gb|DC921620.1|DC921620
EST:     GCGTGTGGATCGGAGGCTCCATCTTGGCATCCCTCAGCACCTTCCAGCAG                         ATGTGGATCGCGAAATCAGAGTACGACGAGTCAGGTCCATCAATTGTGCAT
genomic: GCGTGTGGATCGGAGGCTCCATCTTGGCATCCCTCAGCACCTTCCAGCAGgtaaactgag ... tgtggtgcagATGTGGATCGCGAAATCAGAGTACGACGAGTCAGGTCCATCAATTGTGCAT
EST: gi|37833719|gb|BJ591731.1|BJ591731
EST:     GCGTGTGGATCGGAGGCTCCATCTTGGCATCCCTCAGCACCTTCCAGCAG                         ATGTGGATCGCGAAATCAGAGTACGACGAGTCAGGTCCATCAATTGTGCAT
genomic: GCGTGTGGATCGGAGGCTCCATCTTGGCATCCCTCAGCACCTTCCAGCAGgtaaactgag ... tgtggtgcagATGTGGATCGCGAAATCAGAGTACGACGAGTCAGGTCCATCAATTGTGCAT
EST: gi|208356097|gb|DC957299.1|DC957299
EST:     GCGTGTGGATCGGAGGCTCCATCTTGGCATCCCTCAGCACCTTCCAGCAG                         ATGTGGATCGCGAAATCAGAGTACGACGAGTCAGGTCCATCAATTGTGCAT
genomic: GCGTGTGGATCGGAGGCTCCATCTTGGCATCCCTCAGCACCTTCCAGCAGgtaaactgag ... tgtggtgcagATGTGGATCGCGAAATCAGAGTACGACGAGTCAGGTCCATCAATTGTGCAT
EST: gi|208363943|gb|DC950347.1|DC950347
EST:     GCGTGTGGATCGGAGGCTCCATCTTGGCATCCCTCAGCACCTTCCAGCAG                         ATGTGGATCGCGAAATCAGAGTACGACGAGTCAGGTCCATCAATTGTGCAT
genomic: GCGTGTGGATCGGAGGCTCCATCTTGGCATCCCTCAGCACCTTCCAGCAGgtaaactgag ... tgtggtgcagATGTGGATCGCGAAATCAGAGTACGACGAGTCAGGTCCATCAATTGTGCAT
EST: gi|162171299|gb|FC346418.1|FC346418
EST:     GCGTGTGGATCGGAGGCTCCATCTTGGCATCCCTCAGCACCTTCCAGCAG                         ATGTGGATCGCGAAATCAGAGTACGACGAGTCAGGTCCATCAATTGTGCAT
genomic: GCGTGTGGATCGGAGGCTCCATCTTGGCATCCCTCAGCACCTTCCAGCAGgtaaactgag ... tgtggtgcagATGTGGATCGCGAAATCAGAGTACGACGAGTCAGGTCCATCAATTGTGCAT
EST: gi|162249052|gb|FC420355.1|FC420355
EST:     GCGTGTGGATCGGAGGCTCCATCTTGGCATCCCTCAGCACCTTCCAGCAG                         ATGTGGATCGCGAAATCAGAGTACGACGAGTCAGGTCCATCAATTGTGCAT
genomic: GCGTGTGGATCGGAGGCTCCATCTTGGCATCCCTCAGCACCTTCCAGCAGgtaaactgag ... tgtggtgcagATGTGGATCGCGAAATCAGAGTACGACGAGTCAGGTCCATCAATTGTGCAT
EST: gi|67692069|gb|BJ952302.1|BJ952302
EST:     GCGTGTGGATCGGAGGCTCCATCTTGGCATCCCTCAGCACCTTCCAGCAG                         ATGTGGATCGCGAAATCAGAGTACGACGAGTCAGGTCCATCAATTGTGCAT
genomic: GCGTGTGGATCGGAGGCTCCATCTTGGCATCCCTCAGCACCTTCCAGCAGgtaaactgag ... tgtggtgcagATGTGGATCGCGAAATCAGAGTACGACGAGTCAGGTCCATCAATTGTGCAT
EST: gi|208354487|gb|DC926636.1|DC926636
EST:     GCGTGTGGATCGGAGGCTCCATCTTGGCATCCCTCAGCACCTTCCAGCAG                         ATGTGGATCGCGAAATCAGAGTACGACGAGTCAGGTCCATCAATTGTGCAT
genomic: GCGTGTGGATCGGAGGCTCCATCTTGGCATCCCTCAGCACCTTCCAGCAGgtaaactgag ... tgtggtgcagATGTGGATCGCGAAATCAGAGTACGACGAGTCAGGTCCATCAATTGTGCAT
EST: gi|67723697|gb|BJ973956.1|BJ973956
EST:     GCGTGTGGATCGGAGGCTCCATCTTGGCATCCCTCAGCACCTTCCAGCAG                         ATGTGGATCGCGAAATCAGAGTACGACGAGTCAGGTCCATCAATTGTGCAT
genomic: GCGTGTGGATCGGAGGCTCCATCTTGGCATCCCTCAGCACCTTCCAGCAGgtaaactgag ... tgtggtgcagATGTGGATCGCGAAATCAGAGTACGACGAGTCAGGTCCATCAATTGTGCAT
EST: gi|162198491|gb|FC375326.1|FC375326
EST:     GCGTGTGGATCGGAGGCTCCATCTTGGCATCCCTCAGCACCTTCCAGCAG                         ATGTGGATCGCGAAATCAGAGTACGACGAGTCAGGTCCATCAATTGTGCAT
genomic: GCGTGTGGATCGGAGGCTCCATCTTGGCATCCCTCAGCACCTTCCAGCAGgtaaactgag ... tgtggtgcagATGTGGATCGCGAAATCAGAGTACGACGAGTCAGGTCCATCAATTGTGCAT
EST: gi|208395806|gb|DC924244.1|DC924244
EST:     GCGTGTGGATCGGAGGCTCCATCTTGGCATCCCTCAGCACCTTCCAGCAG                         ATGTGGATCGCGAAATCAGAGTACGACGAGTCAGGTCCATCAATTGTGCAT
genomic: GCGTGTGGATCGGAGGCTCCATCTTGGCATCCCTCAGCACCTTCCAGCAGgtaaactgag ... tgtggtgcagATGTGGATCGCGAAATCAGAGTACGACGAGTCAGGTCCATCAATTGTGCAT
EST: gi|208381696|gb|DC928359.1|DC928359
EST:     GCGTGTGGATCGGAGGCTCCATCTTGGCATCCCTCAGCACCTTCCAGCAG                         ATGTGGATCGCGAAATCAGAGTACGACGAGTCAGGTCCATCAATTGTGCAT
genomic: GCGTGTGGATCGGAGGCTCCATCTTGGCATCCCTCAGCACCTTCCAGCAGgtaaactgag ... tgtggtgcagATGTGGATCGCGAAATCAGAGTACGACGAGTCAGGTCCATCAATTGTGCAT
EST: gi|67727008|gb|BJ977267.1|BJ977267
EST:     GCGTGTGGATCGGAGGCTCCATCTTGGCATCCCTCAGCACCTTCCAGCAG                         ATGTGGATCGCGAAATCAGAGTACGACGAGTCAGGTCCATCAATTGTGCAT
genomic: GCGTGTGGATCGGAGGCTCCATCTTGGCATCCCTCAGCACCTTCCAGCAGgtaaactgag ... tgtggtgcagATGTGGATCGCGAAATCAGAGTACGACGAGTCAGGTCCATCAATTGTGCAT
EST: gi|37821401|gb|BJ579467.1|BJ579467
EST:     GCGTGTGGATCGGAGGCTCCATCTTGGCATCCCTCAGCACCTTCCAGCAG                         ATGTGGATCGCGAAATCAGAGTACGACGAGTCAGGTCCATCAATTGTGCAT
genomic: GCGTGTGGATCGGAGGCTCCATCTTGGCATCCCTCAGCACCTTCCAGCAGgtaaactgag ... tgtggtgcagATGTGGATCGCGAAATCAGAGTACGACGAGTCAGGTCCATCAATTGTGCAT
EST: gi|208388331|gb|DC945607.1|DC945607
EST:     GCGTGTGGATCGGAGGCTCCATCTTGGCATCCCTCAGCACCTTCCAGCAG                         ATGTGGATCGCGAAATCAGAGTACGACGAGTCAGGTCCATCAATTGTGCAT
genomic: GCGTGTGGATCGGAGGCTCCATCTTGGCATCCCTCAGCACCTTCCAGCAGgtaaactgag ... tgtggtgcagATGTGGATCGCGAAATCAGAGTACGACGAGTCAGGTCCATCAATTGTGCAT
EST: gi|67696073|gb|BJ956306.1|BJ956306
EST:     CTTGGCATCCCTCAGCACCTTCCAGCAG                         ATGTGGATCGCGAAATCAGAGTACGACGAGTCAGGTCCATCAATTGTGCAT
genomic: CTTGGCATCCCTCAGCACCTTCCAGCAGgtaaactgag ... tgtggtgcagATGTGGATCGCGAAATCAGAGTACGACGAGTCAGGTCCATCAATTGTGCAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttcgagaggttggttaattcggtgtttgcacatattgttctttctgtggtgcagATGTGGATCGCGAAATCAGAGTACGACGAGTCAGGTCCATCAATTGTGCATAGGAAGTGTTTCTAGGTAAGATGTATGTACCGCTTGACTTTTTCATGAC
            ggttaat  putative branch site (score: 4)
                                   ttgttctttct  putative PPT
                                atattgtt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaaactgagtttgcatgatattttctacgttggacgtggtaaatattgaacttcttttcagttagcagtcggaatttgagtatgtttcgagaggttggttaattcggtgtttgcacatattgttctttctgtggtgcagATGTGGATCGCGAAATCAGAGTACGACGAGTCAGGTCCATCAATTGTGCATAGGAAGTGTTTCTAGGTAAGATGTATGTACCGCTTGACTTTTTCATGAC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG