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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgagcggaaggtctaatttcagtcccatcagtcaggtacatttgactttctatcatgattattgaattgcagtaatagctatatgtctaatttaatgcagGCAACTGGAGAGGACTACAATGTCGAGGAAGGTGAAGGAAAGAGACCATTTAGGGCTCTTTTAGATGTCGGTCTAGTGAGGACCACTACCGGGAACAGGG

Basic information

species Physcomitrella patens
transcript PP1S371_31V6.3
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18334883|gb|BJ166900.1|BJ166900
EST:     GTCATTTAAAGAATTTCGAGTTGGACCAGGAGTACGTAGGCAATGAGACG                         GCAACTGGAGAGGACTACAATGTCGAGGAAGGTGAAGGAAAGAGACCATTT
genomic: GTCATTTAAAGAATTTCGAGTTGGACCAGGAGTACGTAGGCAATGAGACGgtttgtttct ... tttaatgcagGCAACTGGAGAGGACTACAATGTCGAGGAAGGTGAAGGAAAGAGACCATTT
EST: gi|208373862|gb|DC956336.1|DC956336
EST:     GTCATTTAAAGAATTTCGAGTTGGACCAGGAGTACGTAGGCAATGAGACG                         GCAACTGGAGAGGACTACAATGTCGAGGAAGGTGAAGGAAAGAGACCATTT
genomic: GTCATTTAAAGAATTTCGAGTTGGACCAGGAGTACGTAGGCAATGAGACGgtttgtttct ... tttaatgcagGCAACTGGAGAGGACTACAATGTCGAGGAAGGTGAAGGAAAGAGACCATTT
EST: gi|18338022|gb|BJ170046.1|BJ170046
EST:     GTCATTTAAAGAATTTCGAGTTGGACCAGGAGTACGTAGGCAATGAGACG                         GCAACTGGAGAGGACTACAATGTCGAGGAAGGTGAAGGAAAGAGACCATTT
genomic: GTCATTTAAAGAATTTCGAGTTGGACCAGGAGTACGTAGGCAATGAGACGgtttgtttct ... tttaatgcagGCAACTGGAGAGGACTACAATGTCGAGGAAGGTGAAGGAAAGAGACCATTT
EST: gi|208360331|gb|DC949986.1|DC949986
EST:     GTCATTTAAAGAATTTCGAGTTGGACCAGGAGTACGTAGGCAATGAGACG                         GCAACTGGAGAGGACTACAATGTCGAGGAAGGTGAAGGAAAGAGACCATTT
genomic: GTCATTTAAAGAATTTCGAGTTGGACCAGGAGTACGTAGGCAATGAGACGgtttgtttct ... tttaatgcagGCAACTGGAGAGGACTACAATGTCGAGGAAGGTGAAGGAAAGAGACCATTT
EST: gi|67696699|gb|BJ956932.1|BJ956932
EST:     GTCATTTAAAGAATTTCGAGTTGGACCAGGAGTACGTAGGCAATGAGACG                         GCAACTGGAGAGGACTACAATGTCGAGGAAGGTGAAGGAAAGAGACCATTT
genomic: GTCATTTAAAGAATTTCGAGTTGGACCAGGAGTACGTAGGCAATGAGACGgtttgtttct ... tttaatgcagGCAACTGGAGAGGACTACAATGTCGAGGAAGGTGAAGGAAAGAGACCATTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctttctatcatgattattgaattgcagtaatagctatatgtctaatttaatgcagGCAACTGGAGAGGACTACAATGTCGAGGAAGGTGAAGGAAAGAGACCATTTAGGGCTCTTTTAGATGTCGGTCTAGTGAGGACCACTACCGGGAACAGGG
                                  tatatgtctaatttaa  TA-rich tract