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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatgttacctactcatctctctctcccgaagttcgcaaatgtagctagtttcagtaaagagtattttacatggtcctcatgtgattaaaagtctaattgtagaaaaatcatcgatcgtgcagGTTGAGGAAGTTGCTGCCCCCAGGACAAACAGGAAGAACCAAGCCCGCCTGCGCAGCGGCGCCACTTCAGCCACTGCGACTGCTTAGATACAATGTTGAT

Basic information

species Physcomitrella patens
transcript PP1S364_56V6.2
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162192863|gb|FC370182.1|FC370182
EST:     GCCACATTGAGCTCGTCCTCTCAGAGAAGGAGGCTCCAGTAAAGAAAGAG                         GTTGAGGAAGTTGCTGCCCCCAGGACAAACAGGAAGAACCAAGCCCGCCTG
genomic: GCCACATTGAGCTCGTCCTCTCAGAGAAGGAGGCTCCAGTAAAGAAAGAGgtaatgttac ... gatcgtgcagGTTGAGGAAGTTGCTGCCCCCAGGACAAACAGGAAGAACCAAGCCCGCCTG
EST: gi|7046864|gb|AW476808.1|AW476808
EST:     GCCACATTGAGCTCGTCCTCTCAGAGAAGGAGGCTCCAGTAAAGAAAGAG                         GTTGAGGAAGTTGCTGCCCCCAGGACAAACAGGAAGAACCAAGCCCGCCTG
genomic: GCCACATTGAGCTCGTCCTCTCAGAGAAGGAGGCTCCAGTAAAGAAAGAGgtaatgttac ... gatcgtgcagGTTGAGGAAGTTGCTGCCCCCAGGACAAACAGGAAGAACCAAGCCCGCCTG
EST: gi|162271131|gb|FC447146.1|FC447146
EST:     GCCACATTGAGCTCGTCCTTTCAGAGAAGGAGGCTCCAGTAAAGAAAGAG                         GTTGAGGAAGTTGCTGCCCCCAGGACAAACAGGAAGAACCAAGCCCGCCTG
genomic: GCCACATTGAGCTCGTCCTCTCAGAGAAGGAGGCTCCAGTAAAGAAAGAGgtaatgttac ... gatcgtgcagGTTGAGGAAGTTGCTGCCCCCAGGACAAACAGGAAGAACCAAGCCCGCCTG
EST: gi|67721496|gb|BJ971755.1|BJ971755
EST:     GCCACATTGAGCTCGTCCTCTCAGAGAAGGAGGCTCCAGTAAAGAAAGAG                         GTTGAGGAAGTTGCTGCCCCCAGGACAAACAGGAAGAACCAAGCCCGCCTG
genomic: GCCACATTGAGCTCGTCCTCTCAGAGAAGGAGGCTCCAGTAAAGAAAGAGgtaatgttac ... gatcgtgcagGTTGAGGAAGTTGCTGCCCCCAGGACAAACAGGAAGAACCAAGCCCGCCTG
EST: gi|18350729|gb|BJ182780.1|BJ182780
EST:     GCCACATTGAGCTCGTCCTCTCAGAGAAGGAGGCTCCAGTAAAGAAAGAG                         GTTGAGGAAGTTGCTGCCCCCAGGACAAACAGGAAGAACCAAGCCCGCCTG
genomic: GCCACATTGAGCTCGTCCTCTCAGAGAAGGAGGCTCCAGTAAAGAAAGAGgtaatgttac ... gatcgtgcagGTTGAGGAAGTTGCTGCCCCCAGGACAAACAGGAAGAACCAAGCCCGCCTG
EST: gi|37849723|gb|BJ607731.1|BJ607731
EST:     GCCACATTGAGCTCGTCCTCTCAGAGAAGGAGGCTCCAGTAAAGAAAGAG                         GTTGAGGAAGTTGCTGCCCCCAGGACAAACAGGAAGAACCAAGCCCGCCTG
genomic: GCCACATTGAGCTCGTCCTCTCAGAGAAGGAGGCTCCAGTAAAGAAAGAGgtaatgttac ... gatcgtgcagGTTGAGGAAGTTGCTGCCCCCAGGACAAACAGGAAGAACCAAGCCCGCCTG
EST: gi|162239738|gb|FC417137.1|FC417137
EST:     GCCACATTGAGCTCGTCCTCTCAGAGAAGGAGGCTCCAGTAAAGAAAGAG                         GTTGAGGAAGTTGCTGCCCCCAGGACAAACAGGAAGAACCAAGCCCGCCTG
genomic: GCCACATTGAGCTCGTCCTCTCAGAGAAGGAGGCTCCAGTAAAGAAAGAGgtaatgttac ... gatcgtgcagGTTGAGGAAGTTGCTGCCCCCAGGACAAACAGGAAGAACCAAGCCCGCCTG
EST: gi|37830055|gb|BJ588067.1|BJ588067
EST:     GCCACATTGAGCTCGTCCTCTCAGAGAAGGAGGCTCCAGTAAAGAAAGAG                         GTTGAGGAAGTTGCTGCCCCCAGGACAAACAGGAAGAACCAAGCCCGCCTG
genomic: GCCACATTGAGCTCGTCCTCTCAGAGAAGGAGGCTCCAGTAAAGAAAGAGgtaatgttac ... gatcgtgcagGTTGAGGAAGTTGCTGCCCCCAGGACAAACAGGAAGAACCAAGCCCGCCTG
EST: gi|162275627|gb|FC451642.1|FC451642
EST:     GCCACATTGAGCTCGTCCTCTCAGAGAAGGAGGCTCCAGTAAAGAAAGAG                         GTTGAGGAAGTTGCTGCCCCCAGGACAAACAGGAAGAACCAAGCCCGCCTG
genomic: GCCACATTGAGCTCGTCCTCTCAGAGAAGGAGGCTCCAGTAAAGAAAGAGgtaatgttac ... gatcgtgcagGTTGAGGAAGTTGCTGCCCCCAGGACAAACAGGAAGAACCAAGCCCGCCTG
EST: gi|162265094|gb|FC440973.1|FC440973
EST:     GCCACATTGAGCTCGTCCTCTCAGAGAAGGAGGCTCCAGTAAAGAAAGAG                         GTTGAGGAAGTTGCTGCCCCCAGGACAAACAGGAAGAACCAAGCCCGCCTG
genomic: GCCACATTGAGCTCGTCCTCTCAGAGAAGGAGGCTCCAGTAAAGAAAGAGgtaatgttac ... gatcgtgcagGTTGAGGAAGTTGCTGCCCCCAGGACAAACAGGAAGAACCAAGCCCGCCTG
EST: gi|37832810|gb|BJ590822.1|BJ590822
EST:     GCCACATTGAGCTCGTCCTCTCAGAGAAGGAGGCTCCAGTAAAGAAAGAG                         GTTGAGGAAGTTGCTGCCCCCAGGACAAACAGGAAGAACCAAGCCCGCCTG
genomic: GCCACATTGAGCTCGTCCTCTCAGAGAAGGAGGCTCCAGTAAAGAAAGAGgtaatgttac ... gatcgtgcagGTTGAGGAAGTTGCTGCCCCCAGGACAAACAGGAAGAACCAAGCCCGCCTG
EST: gi|37851335|gb|BJ609343.1|BJ609343
EST:     GCCACATTGAGCTCGTCCTCTCAGAGAAGGAGGCTCCAGTAAAGAAAGAG                         GTTGAGGAAGTTGCTGCCCCCAGGACAAACAGGAAGAACCAAGCCCGCCTG
genomic: GCCACATTGAGCTCGTCCTCTCAGAGAAGGAGGCTCCAGTAAAGAAAGAGgtaatgttac ... gatcgtgcagGTTGAGGAAGTTGCTGCCCCCAGGACAAACAGGAAGAACCAAGCCCGCCTG
EST: gi|37836617|gb|BJ594625.1|BJ594625
EST:     GCCACATTGAGCTCGTCCTCTCAGAGAAGGAGGCTCCAGTAAAGAAAGAG                         GTTGAGGAAGTTGCTGCCCCCAGGACAAACAGGAAGAACCAAGCCCGCCTG
genomic: GCCACATTGAGCTCGTCCTCTCAGAGAAGGAGGCTCCAGTAAAGAAAGAGgtaatgttac ... gatcgtgcagGTTGAGGAAGTTGCTGCCCCCAGGACAAACAGGAAGAACCAAGCCCGCCTG
EST: gi|13250457|gb|BG361360.1|BG361360
EST:     GCCACACTGAGCTCGTCCTCTCATAGAAGGAGGCTCCAGTAAAGAAAGAG                         GTTGAGGAAGTTGCTGCCCCCAGG
genomic: GCCACATTGAGCTCGTCCTCTCAGAGAAGGAGGCTCCAGTAAAGAAAGAGgtaatgttac ... gatcgtgcagGTTGAGGAAGTTGCTGCCCCCAGG
EST: gi|162239739|gb|FC417138.1|FC417138
EST:     GCCACATTGAGCTCGTCCTCTCAGAGAAGGAGGCTCCAGTAAAGAAAGAG                         GTTGAGGAAGTTGCTGCCCCCAGGACAAACAGGAAGAACCAAGCCCGCCTG
genomic: GCCACATTGAGCTCGTCCTCTCAGAGAAGGAGGCTCCAGTAAAGAAAGAGgtaatgttac ... gatcgtgcagGTTGAGGAAGTTGCTGCCCCCAGGACAAACAGGAAGAACCAAGCCCGCCTG
EST: gi|37841405|gb|BJ599413.1|BJ599413
EST:     GCCACATTGAGCTCGTCCTCTCAGAGAAGGAGGCTCCAGTAAAGAAAGAG                         GTTGAGGAAGTTGCTGCCCCCAGGACAAACAGGAAGAACCAAGCCCGCCTG
genomic: GCCACATTGAGCTCGTCCTCTCAGAGAAGGAGGCTCCAGTAAAGAAAGAGgtaatgttac ... gatcgtgcagGTTGAGGAAGTTGCTGCCCCCAGGACAAACAGGAAGAACCAAGCCCGCCTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acatggtcctcatgtgattaaaagtctaattgtagaaaaatcatcgatcgtgcagGTTGAGGAAGTTGCTGCCCCCAGGACAAACAGGAAGAACCAAGCCCGCCTGCGCAGCGGCGCCACTTCAGCCACTGCGACTGCTTAGATACAATGTTGAT
                       gtctaat  putative branch site (score: 3)
                attaaaagtctaatt  TA-rich tract