1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtatgattttttgtaagagctggggttatactatcacaaaatgtacgctaaacagttcttgtgatatctgattctttgttttgtgaacaagcagtaagctgcatctgagatttctaattattgccttgatgagatttgtgtttctgaaatcagGGAAGAGTGCCAGGTGAGATGGTAGTAGAGGAGCGCATCGAGGCAGCGGATCGCCGGAGAGTGGATGGAAACGAGTTATTCAAGGAAGGGAAAATTGCCG
species | Physcomitrella patens |
transcript | PP1S364_48V6.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGATGTCCTGTACGAGGTGGAGCTCATAGGTTTACCA-GAACCTCGAGAG GGAAGAGTGCCAGGTGAGATGGTAGTAGAGGAGCGCATCGAGGCAGCGGATEST: gi|162203750|gb|FC378625.1|FC378625
genomic: AGATGTCCTGTACGAGGTGGAGCTCATAGGTT-ACCAAGAACCTCGAGAGgtatgatttt ... ctgaaatcagGGAAGAGTGCCAGGTGAGATGGTAGTAGAGGAGCGCATCGAGGCAGCGGAT
EST: CAGATGTCCTGTACGAGGTGGAGCTCATAGGTTACCAAGAACCTCGAGAG GGAAGAGTGCCAGGTGAGATGGTAGTAGAGGAGCGCATCGAGGCAGCGGATEST: gi|162219329|gb|FC395325.1|FC395325
genomic: CAGATGTCCTGTACGAGGTGGAGCTCATAGGTTACCAAGAACCTCGAGAGgtatgatttt ... ctgaaatcagGGAAGAGTGCCAGGTGAGATGGTAGTAGAGGAGCGCATCGAGGCAGCGGAT
EST: CAGATGTCCTGTACGAGGTGGAGCTCATAGGTTACCAAGAACCTCGAGAG GGAAGAGTGCCAGGTGAGATGGTAGTAGAGGAGCGCATCGAGGCAGCGGATEST: gi|208346599|gb|DC916865.1|DC916865
genomic: CAGATGTCCTGTACGAGGTGGAGCTCATAGGTTACCAAGAACCTCGAGAGgtatgatttt ... ctgaaatcagGGAAGAGTGCCAGGTGAGATGGTAGTAGAGGAGCGCATCGAGGCAGCGGAT
EST: CAGATGTNCTGTACGAGG-GGAGCTCATAGG-TACCAAGAACCTCGAGAG GGAAGAGTGCCAGGTGAGATGGTAGTAGAGGAGCGCATCGAGGCAGCGGAT
genomic: CAGATGTCCTGTACGAGGTGGAGCTCATAGGTTACCAAGAACCTCGAGAGgtatgatttt ... ctgaaatcagGGAAGAGTGCCAGGTGAGATGGTAGTAGAGGAGCGCATCGAGGCAGCGGAT
ctgcatctgagatttctaattattgccttgatgagatttgtgtttctgaaatcagGGAAGAGTGCCAGGTGAGATGGTAGTAGAGGAGCGCATCGAGGCAGCGGATCGCCGGAGAGTGGATGGAAACGAGTTATTCAAGGAAGGGAAAATTGCCG
tgtttct CT-rich tract
agatttctaattatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgattttttgtaagagctggggttatactatcacaaaatgtacgctaaacagttcttgtgatatctgattctttgttttgtgaacaagcagtaagctgcatctgagatttctaattattgccttgatgagatttgtgtttctgaaatcagGGAAGAGTGCCAGGTGAGATGGTAGTAGAGGAGCGCATCGAGGCAGCGGATCGCCGGAGAGTGGATGGAAACGAGTTATTCAAGGAAGGGAAAATTGCCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA