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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttacaagtgcgtctcgagcttgtaccattgtgatttcactcttgggatgtgataactagtgtcacaattacctttctgcatttcttactttcatcattcaaatgtgattagggcttgtctcctaaacctccatggttgacgcgggttctttctccagCACTCTTGGTGGCAGCCATGGTGTTGGTCGCGTATATTACAAAGGTCGAAAAGGTGACTACTACGTCATG

Basic information

species Physcomitrella patens
transcript PP1S360_49V6.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S360_49V6.1 (Physcomitrella patens), 3'ss of exon 4
lower sequence: Vv04s0008g00160.t01 (Vitis vinifera), 3'ss of exon 3
gtttacaagtgcgtctcgagcttgtaccattgtgatttcactcttgggatgtgataactagtgtcacaattacct-ttctgcatttcttactttcatcattcaaatgtgattagggcttgtctcctaaacctccatggttgacgcgggttctttctccagCACTCTTGGTGGCAGCCATGGTGTTGGTCGCGTATATTACAAAGGTCGAAAAGGTGACTACTACGTCATG
                               ||||     ||  ||   | |  | |   || | |     |  | |||     |   || |      ||  | |||||||  ||  || | | ||     ||  || ||            | || |||  | ||||||||||||||||||||    || ||| ||||||| || ||| ||||||||||||| ||||||
-------------------------------gtgaggcatcttctgatttcttcttatctgtctgattggcatgtattccatggtagctattggatatatatacatgtgat--ggtattatttgct----ttctttgatt------------tcctgcagTGCACTTGGTGGCAGCCATGGTGTGCCACGGGTACATTACAAGGGCCGACAAGGTGACTACTATGTCATG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtgattagggcttgtctcctaaacctccatggttgacgcgggttctttctccagCACTCTTGGTGGCAGCCATGGTGTTGGTCGCGTATATTACAAAGGTCGAAAAGGTGACTACTACGTCATG
                                           ttctttctcc  CT-rich tract