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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aaactagctagggtctttccttctttctttcatcttcttcttccttacctacttatttaaagcattatagtaatgctgtgtacttttcgtttatttgcagCGCCGAATTCCTTGGCCTCCTCTGCTTCCTATACCTGTGTGATCGAACAAATATCTTTTCTGCATCTAGAAAG

Basic information

species Physcomitrella patens
transcript PP1S357_34V6.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208393279|gb|DC942433.1|DC942433
EST:     ACGTTGAATGAGACCTTTTTGGTGGAGAATCGTCTCACATTGAGGGCTAT                         CGCCGAATTCCTTGGCCTCCTCTGCTTCCTATACCTGTGTGATCGAACAAA
genomic: ACGTTGAATGAGACCTTTTTGGTGGAGAATCGTCTCACATTGAGGGCTATgtgaggtttc ... ttatttgcagCGCCGAATTCCTTGGCCTCCTCTGCTTCCTATACCTGTGTGATCGAACAAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tacctacttatttaaagcattatagtaatgctgtgtacttttcgtttatttgcagCGCCGAATTCCTTGGCCTCCTCTGCTTCCTATACCTGTGTGATCGAACAAATATCTTTTCTGCATCTAGAAAG
 tccttac  putative branch site (score: 2)
                                     cttttcgtttattt  putative PPT
       ttatttaaagcattat  TA-rich tract