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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgcaacatgacaaacatttagttcttatccttgttgccgaagtcttgtttcaaatgaacccacaaacacttagcattgggagatttcattttgccctttcgtcgtgtggtaagagatctccatgtaaaccaaatttgaacagaacgtgcattttgggggtggtgtgcagGTCCCACAATGTGGGGAATACTTCCATATGCAGGATTGAAATTCTATGTGTATGAAACAATGAAACGGCACTTGCCCGAAGACTCTCGGTCATCCTTACC

Basic information

species Physcomitrella patens
transcript PP1S357_30V6.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37824048|gb|BJ582114.1|BJ582114
EST:     CACAAGGGTCTTCCAGGAGGGTGGAGTTCGGGGCTTGTACCGCGGAGTCT                         GTCCCACAATGTGGGGAATACTTCCATATGCAGGATTGAAATTCTATGTGT
genomic: CACAAGGGTCTTCCAGGAGGGTGGAGTTCGGGGCTTGTACCGCGGAGTCTgtaagtgcaa ... tggtgtgcagGTCCCACAATGTGGGGAATACTTCCATATGCAGGATTGAAATTCTATGTGT
EST: gi|162190783|gb|FC367045.1|FC367045
EST:     CACAAGGGTCTTCCAGGAGGGTGGAGTTCGGGGCTTGTACCGCGGAGTCT                         GTCCCACAATGTGGGGAATACTTCCATATGCAGGATTGAAATTCTATGTGT
genomic: CACAAGGGTCTTCCAGGAGGGTGGAGTTCGGGGCTTGTACCGCGGAGTCTgtaagtgcaa ... tggtgtgcagGTCCCACAATGTGGGGAATACTTCCATATGCAGGATTGAAATTCTATGTGT
EST: gi|37833611|gb|BJ591623.1|BJ591623
EST:     ACAAGGGTCTTCCAGGAGGGGTGGAGTTCGGGGCTTGTACCGCGGAGTCT                         GTCCCACAATGTGGGGAATACTTCCATATGCAGGATTGAAATTCTATGTGT
genomic: ACAAGGGTCTTCCAGGA-GGGTGGAGTTCGGGGCTTGTACCGCGGAGTCTgtaagtgcaa ... tggtgtgcagGTCCCACAATGTGGGGAATACTTCCATATGCAGGATTGAAATTCTATGTGT
EST: gi|37828753|gb|BJ586765.1|BJ586765
EST:     CACAAGGGTCTTCCAGGAGGGTGGAGTTCGGGGCTTGTACCGCGGAGTCT                         GTCCCACAATGTGGGGAATACTTCCATATGCAGGATTGAAATTCTATGTGT
genomic: CACAAGGGTCTTCCAGGAGGGTGGAGTTCGGGGCTTGTACCGCGGAGTCTgtaagtgcaa ... tggtgtgcagGTCCCACAATGTGGGGAATACTTCCATATGCAGGATTGAAATTCTATGTGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gatctccatgtaaaccaaatttgaacagaacgtgcattttgggggtggtgtgcagGTCCCACAATGTGGGGAATACTTCCATATGCAGGATTGAAATTCTATGTGTATGAAACAATGAAACGGCACTTGCCCGAAGACTCTCGGTCATCCTTACC
                aaatttgaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagtgcaacatgacaaacatttagttcttatccttgttgccgaagtcttgtttcaaatgaacccacaaacacttagcattgggagatttcattttgccctttcgtcgtgtggtaagagatctccatgtaaaccaaatttgaacagaacgtgcattttgggggtggtgtgcagGTCCCACAATGTGGGGAATACTTCCATATGCAGGATTGAAATTCTATGTGTATGAAACAATGAAACGGCACTTGCCCGAAGACTCTCGGTCATCCTTACC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA