1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ggacagctgcttcaaaatggctatttctgaaagaaagactattgttgtcttcaagctgctcaacgaaggtgcatgttttcactatttgtttttgcaacagATCGGCAATCATTCCTGAATACAGCTCGTTGGGTGGAAGAAGTACGAACGGAGCGTGGGAGTGATGTTATTATTATGCTAGTTGGCAATAAGACTGATCT
species | Physcomitrella patens |
transcript | PP1S353_41V6.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TAGCTATATCCGTGATTCATCAGTCGCAGTGGTCGTTTATGACGTGTCAA ATCGGCAATCATTCCTGAATACAGCTCGTTGGGTGGAAGAAGTACGAACGGEST: gi|162272435|gb|FC449061.1|FC449061
genomic: TAGCTATATCCGTGATTCATCAGTCGCAGTGGTCGTTTATGACGTGTCAAgtgagtctta ... tttgcaacagATCGGCAATCATTCCTGAATACAGCTCGTTGGGTGGAAGAAGTACGAACGG
EST: TAGCTATATCCGTGATTCATCAGTCGCAGTGGTCGTTTATGACGTGTCAA ATCGGCAATCATTCCTGAATACAGCTCGTTGGGTGGAAGAAGTACGAACGGEST: gi|18329546|gb|BJ161552.1|BJ161552
genomic: TAGCTATATCCGTGATTCATCAGTCGCAGTGGTCGTTTATGACGTGTCAAgtgagtctta ... tttgcaacagATCGGCAATCATTCCTGAATACAGCTCGTTGGGTGGAAGAAGTACGAACGG
EST: TAGCTATATCCGTGATTCATCAGTCGCAGTGGTCGTTTATGACGTGTCAA ATCGGCAATCATTCCTGAATACAGCTCGTTGGGTGGAAGAAGTACGAACGG
genomic: TAGCTATATCCGTGATTCATCAGTCGCAGTGGTCGTTTATGACGTGTCAAgtgagtctta ... tttgcaacagATCGGCAATCATTCCTGAATACAGCTCGTTGGGTGGAAGAAGTACGAACGG
tgtcttcaagctgctcaacgaaggtgcatgttttcactatttgtttttgcaacagATCGGCAATCATTCCTGAATACAGCTCGTTGGGTGGAAGAAGTACGAACGGAGCGTGGGAGTGATGTTATTATTATGCTAGTTGGCAATAAGACTGATCT
tttgttttt CT-rich tract
tatttgttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggacagctgcttcaaaatggctatttctgaaagaaagactattgttgtcttcaagctgctcaacgaaggtgcatgttttcactatttgtttttgcaacagATCGGCAATCATTCCTGAATACAGCTCGTTGGGTGGAAGAAGTACGAACGGAGCGTGGGAGTGATGTTATTATTATGCTAGTTGGCAATAAGACTGATCT
- - - -tgcttca
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