1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtgaactttgcgctctgtttgtcagtattttctgcacaatcatattggaagcatctggtgaaagttccccttaaattgtgatacttttcgtacctaatgctgtatttgtgtccatatgctcatcgttacagGTATGAAATTGACAAAGTAACAGCCGGACAACGCCTTGATTTGAACCTAGAAAGAGG
species | Physcomitrella patens |
transcript | PP1S34_228V6.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GAAACAGAAAGGCTTCGAACTGATATTGACAAAATGCGAAGCGAACTTAG GTATGAAATTGACAAAGTAACAGCCGGACAACGCCTTGATTTGAACCTAGAEST: gi|208386160|gb|DC949071.1|DC949071
genomic: GAAACAGAAAGGCTTCGAACTGATATTGACAAAATGCGAAGCGAACTTAGgtgaactttg ... atcgttacagGTATGAAATTGACAAAGTAACAGCCGGACAACGCCTTGATTTGAACCTAGA
EST: GAAACAGAAAGGCTTCGAACTGATATTGACAAAATGCGAAGCGAACTTAG GTATGAAATTGACAAAGTAACAGCCGGACAACGCCTTGATTTGAACCTAGAEST: gi|208353536|gb|DC918508.1|DC918508
genomic: GAAACAGAAAGGCTTCGAACTGATATTGACAAAATGCGAAGCGAACTTAGgtgaactttg ... atcgttacagGTATGAAATTGACAAAGTAACAGCCGGACAACGCCTTGATTTGAACCTAGA
EST: GAAACAGAAAGGCTTCGAACTGATATTGACAAAATGCGAAGCGAACTTAG GTATGAAATTGACAAAGTAACAGCCGGACAACGCCTTGATTTGAACCTAGAEST: gi|18335675|gb|BJ167695.1|BJ167695
genomic: GAAACAGAAAGGCTTCGAACTGATATTGACAAAATGCGAAGCGAACTTAGgtgaactttg ... atcgttacagGTATGAAATTGACAAAGTAACAGCCGGACAACGCCTTGATTTGAACCTAGA
EST: GAAACAGAAAGGCTTCGAACTGATATTGACAAAATGCGAAGCGAACTTAG GTATGAAATTGACAAAGTAACAGCCGGACAACGCCTTGATTTGAACCTAGAEST: gi|208356048|gb|DC957292.1|DC957292
genomic: GAAACAGAAAGGCTTCGAACTGATATTGACAAAATGCGAAGCGAACTTAGgtgaactttg ... atcgttacagGTATGAAATTGACAAAGTAACAGCCGGACAACGCCTTGATTTGAACCTAGA
EST: GAAACAGAAAGGCTTCGAACTGATATTGACAAAATGCGAAGCGAACTTAG GTATGAAATTGACAAAGTAACAGCCGGACAACGCCTTGATTTGAACCTAGA
genomic: GAAACAGAAAGGCTTCGAACTGATATTGACAAAATGCGAAGCGAACTTAGgtgaactttg ... atcgttacagGTATGAAATTGACAAAGTAACAGCCGGACAACGCCTTGATTTGAACCTAGA
tgtgatacttttcgtacctaatgctgtatttgtgtccatatgctcatcgttacagGTATGAAATTGACAAAGTAACAGCCGGACAACGCCTTGATTTGAACCTAGAAAGAGG
acctaat putative branch site (score: 5)
tactttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaactttgcgctctgtttgtcagtattttctgcacaatcatattggaagcatctggtgaaagttccccttaaattgtgatacttttcgtacctaatgctgtatttgtgtccatatgctcatcgttacagGTATGAAATTGACAAAGTAACAGCCGGACAACGCCTTGATTTGAACCTAGAAAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG