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gtacactcttaattccattgcaactatgttttaaggattgttgtgtctactagttggaaaattcgttcggcaatttcattccatcttcattctaagcagcaatagaagcatcaccttcacttatgttccatccacgtgtttattgttgaagGATGCCAAGAATAAGGTGGTGGAGGACGTGGTTATCTTGTCCGGCGATCACCTCTACCGTATGGATTACATGGACTTTGTCCAGAAGCACAGGGACAGTG
species | Physcomitrella patens |
transcript | PP1S347_12V6.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GGTTTCAAGGAACTGCAGATGCCGTCCGGCAATATTTGTGGTTGTTTGAG GATGCCAAGAATAAGGTGGTGGAGGACGTGGTTATCTTGTCCGGCGATCACEST: gi|162213445|gb|FC389122.1|FC389122
genomic: GGTTTCAAGGAACTGCAGATGCCGTCCGGCAATATTTGTGGTTGTTTGAGgtacactctt ... attgttgaagGATGCCAAGAATAAGGTGGTGGAGGACGTGGTTATCTTGTCCGGCGATCAC
EST: GGTTTCAAGGAACTGCAGATGCCGTCCGGCAATATTTGTGGTTGTTTGAG GATGCCAAGAATAAGGTGGTGGAGGACGTGGTTATCTTGTCCGGCGATCACEST: gi|162158645|gb|FC335532.1|FC335532
genomic: GGTTTCAAGGAACTGCAGATGCCGTCCGGCAATATTTGTGGTTGTTTGAGgtacactctt ... attgttgaagGATGCCAAGAATAAGGTGGTGGAGGACGTGGTTATCTTGTCCGGCGATCAC
EST: GGTTTCAAGGAACTGCAGATGCCGTCCGGCAATATTTGTGGTTGTTTGAG GATGCCAAGAATAANGTGGTGGAGGACGTGGTTATCTTGTCCGGCGATCACEST: gi|162180137|gb|FC356702.1|FC356702
genomic: GGTTTCAAGGAACTGCAGATGCCGTCCGGCAATATTTGTGGTTGTTTGAGgtacactctt ... attgttgaagGATGCCAAGAATAAGGTGGTGGAGGACGTGGTTATCTTGTCCGGCGATCAC
EST: GGTTTCAAGGAACTGCAGATGCCGTCCGGCAATATTTGTGGTTGTTTGAG GATGCCAAGAATAAGGTGGTGGAGGACGTGGTTATCTTGTCCGGCGATCACEST: gi|162168539|gb|FC344463.1|FC344463
genomic: GGTTTCAAGGAACTGCAGATGCCGTCCGGCAATATTTGTGGTTGTTTGAGgtacactctt ... attgttgaagGATGCCAAGAATAAGGTGGTGGAGGACGTGGTTATCTTGTCCGGCGATCAC
EST: GGTTTCAAGGAACTGCAGATGCCGTCCGGCAATATTTGTGGTTGTTTGAG GATGCCAAGAATAAGGTGGTGGAGGACGTGGTTATCTTGTCCGGCGATCACEST: gi|162157720|gb|FC335434.1|FC335434
genomic: GGTTTCAAGGAACTGCAGATGCCGTCCGGCAATATTTGTGGTTGTTTGAGgtacactctt ... attgttgaagGATGCCAAGAATAAGGTGGTGGAGGACGTGGTTATCTTGTCCGGCGATCAC
EST: GGTTTCAAGGAACTGCAGATGCCGTCCGGCAATATTTGTGGTTGTTTGAG GATGCCAAGAATAAGGTGGTGGAGGACGTGGTTATCTTGTCCGGCGATCAC
genomic: GGTTTCAAGGAACTGCAGATGCCGTCCGGCAATATTTGTGGTTGTTTGAGgtacactctt ... attgttgaagGATGCCAAGAATAAGGTGGTGGAGGACGTGGTTATCTTGTCCGGCGATCAC
cagcaatagaagcatcaccttcacttatgttccatccacgtgtttattgttgaagGATGCCAAGAATAAGGTGGTGGAGGACGTGGTTATCTTGTCCGGCGATCACCTCTACCGTATGGATTACATGGACTTTGTCCAGAAGCACAGGGACAGTG
tttattgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacactcttaattccattgcaactatgttttaaggattgttgtgtctactagttggaaaattcgttcggcaatttcattccatcttcattctaagcagcaatagaagcatcaccttcacttatgttccatccacgtgtttattgttgaagGATGCCAAGAATAAGGTGGTGGAGGACGTGGTTATCTTGTCCGGCGATCACCTCTACCGTATGGATTACATGGACTTTGTCCAGAAGCACAGGGACAGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC