Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattctatacacgtccgatttctttctaacattcagaacctactttaagatcatatgtagatgtttccagttttacaaactgcttcacactttggcggccttttttatctggggctgatgcatgttgattttttgacttgtgtagGTCTTCCTCCTCCTCCACCCCCCCAGTTCCCAGGAAATATTGTTTCACCGCCAAGTCCGGCCAACCAACTTCCATCTGGATTGGATCCAAGTAATAAATA

Basic information

species Physcomitrella patens
transcript PP1S343_14V6.1
intron # 4
splice site 3'
intron type U2


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttggcggccttttttatctggggctgatgcatgttgattttttgacttgtgtagGTCTTCCTCCTCCTCCACCCCCCCAGTTCCCAGGAAATATTGTTTCACCGCCAAGTCCGGCCAACCAACTTCCATCTGGATTGGATCCAAGTAATAAATA
                                        ttttgac  putative branch site (score: 3)
          ttttttatct  TA-rich tract