1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...gtgaaacgtatttatctttctgtctctagcatgcagttatattgaatttgttgagtcatttttgcggttgtattacttatgttgtatttctgcggtctagAATTTGTTCGAAAGCATGGGAGAATATATAGACGGTCTCAAGTTCTCCGGAGGATGTCATAGTTTGATGTCCAGAGACATCGTCCAGCAGTGGATTAGAC
species | Physcomitrella patens |
transcript | PP1S33_245V6.3 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CAGAGGTCCGAGGACCTTTTCACTCTGCCACTGGATTCGAACCTTTGCAG AATTTGTTCGAAAGCATGGGAGAATATATAGACGGTCTCAAGTTCTCCGGAEST: gi|162253723|gb|FC429837.1|FC429837
genomic: CAGAGGTCCGAGGACCTTTTCACTCTGCCACTGGATTCGAACCTTTGCAGgtacgagcgg ... tgcggtctagAATTTGTTCGAAAGCATGGGAGAATATATAGACGGTCTCAAGTTCTCCGGA
EST: CAGAGGTCCGAGGACCTTTTCACTCTGCCACTGGATTCGAACCTTTGCAG AATTTGTTCGAAAGCATGGGAGAATATATAGACGGTCTCAAGTTCTCCGGAEST: gi|208382981|gb|DC927731.1|DC927731
genomic: CAGAGGTCCGAGGACCTTTTCACTCTGCCACTGGATTCGAACCTTTGCAGgtacgagcgg ... tgcggtctagAATTTGTTCGAAAGCATGGGAGAATATATAGACGGTCTCAAGTTCTCCGGA
EST: CAGAGGTCCGAGGACCTTTTCACTCTGCCACTGGATTCGAACCTTTGCAG AATTTGTTCGAAAGCATGGGAGAATATATAGACGGTCTCAAGTTCTCCGGA
genomic: CAGAGGTCCGAGGACCTTTTCACTCTGCCACTGGATTCGAACCTTTGCAGgtacgagcgg ... tgcggtctagAATTTGTTCGAAAGCATGGGAGAATATATAGACGGTCTCAAGTTCTCCGGA
atttgttgagtcatttttgcggttgtattacttatgttgtatttctgcggtctagAATTTGTTCGAAAGCATGGGAGAATATATAGACGGTCTCAAGTTCTCCGGAGGATGTCATAGTTTGATGTCCAGAGACATCGTCCAGCAGTGGATTAGAC
tatttct CT-rich tract
tattacttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaaacgtatttatctttctgtctctagcatgcagttatattgaatttgttgagtcatttttgcggttgtattacttatgttgtatttctgcggtctagAATTTGTTCGAAAGCATGGGAGAATATATAGACGGTCTCAAGTTCTCCGGAGGATGTCATAGTTTGATGTCCAGAGACATCGTCCAGCAGTGGATTAGAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA