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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtgaccagacttgccttattaaagctactttgtttaatgactaattttcttacgttttttcatgttggccaaatacaaccgtgctcgtcattttcttttgaatacaaagaagttaacttcacagattctgaacacttcatcatcttcacagAACGCTTCATTACAAGATGGAATCGCAAAATCAGAAAGTGCCGATCAGGCGCATGACTCTACGATTCTAGAACCGTCCTCACTGGCCGGCATGAGTGCAG

Basic information

species Physcomitrella patens
transcript PP1S325_74V6.1
intron # 4
splice site 3'
intron type U2


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgaatacaaagaagttaacttcacagattctgaacacttcatcatcttcacagAACGCTTCATTACAAGATGGAATCGCAAAATCAGAAAGTGCCGATCAGGCGCATGACTCTACGATTCTAGAACCGTCCTCACTGGCCGGCATGAGTGCAG
              agttaac  putative branch site (score: 3)
                                           tcatcttc  putative PPT
     atacaaa  TA-rich tract