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gtgtagacatagttttcttctcgagctctctctagcatcgctcaaaacttttccgtctgcgtggctgagttttttaatatcatgttttaaaaattttgattgttaaaattttagtatcgttaaattgaagtatgctttatttgcagCTCTATCTGTCGAGGTCACTGTTGTACCTCCCTCTAGGCTGATGGCTTTGATTGGTCAGGCATTAAAATGGCAACAACATCAAG
species | Physcomitrella patens |
transcript | PP1S31_68V6.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GCTTATCAAGAATCATCCAAAGAGAAAAGACGTGCACAGATTGCTCAAG CTCTATCTGTCGAGGTCACTGTTGTACCTCCCTCTAGGCTGATGGCTTTGAEST: gi|67717592|gb|BJ967851.1|BJ967851
genomic: GCTTATCAAGAATCATCCAAAGAGAAAAGACGTGCACAGATTGCTCAAGgtgtagacat ... ttatttgcagCTCTATCTGTCGAGGTCACTGTTGTACCTCCCTCTAGGCTGATGGCTTTGA
EST: GCTTATCAAGAATCATCCAAAGAGAAAAGACGTGCACAGATTGCTCAAG CTCTATCTGTCGAGGTCACTGTTGTACCTCCCTCTAGGCTGATGGCTTTGAEST: gi|208379508|gb|DC911119.1|DC911119
genomic: GCTTATCAAGAATCATCCAAAGAGAAAAGACGTGCACAGATTGCTCAAGgtgtagacat ... ttatttgcagCTCTATCTGTCGAGGTCACTGTTGTACCTCCCTCTAGGCTGATGGCTTTGA
EST: GCTTATCAAGAATCATCCAAAGAGAAAAGACGTGCACAGATTGCTCAAG CTCTATCTGTCGAGGTCACTGTTGTACCTCCCTCTAGGCTGATGGCTTTGAEST: gi|162182459|gb|FC358058.1|FC358058
genomic: GCTTATCAAGAATCATCCAAAGAGAAAAGACGTGCACAGATTGCTCAAGgtgtagacat ... ttatttgcagCTCTATCTGTCGAGGTCACTGTTGTACCTCCCTCTAGGCTGATGGCTTTGA
EST: GCTTATCAAGAATCATCCAAAGAGAAAAGACGTGCACAGATTGCTCAAG CTCTATCTGTCGAGGTCACTGTTGTACCTCCCTCTAGGCTGATGGCTTTGAEST: gi|18352925|gb|BJ184980.1|BJ184980
genomic: GCTTATCAAGAATCATCCAAAGAGAAAAGACGTGCACAGATTGCTCAAGgtgtagacat ... ttatttgcagCTCTATCTGTCGAGGTCACTGTTGTACCTCCCTCTAGGCTGATGGCTTTGA
EST: GCTTATCAAGAATCATCCAAAGAGAAAAGACGTGCACAGATTGCTCAAG CTCTATCTGTCGAEST: gi|67573598|gb|BJ946422.1|BJ946422
genomic: GCTTATCAAGAATCATCCAAAGAGAAAAGACGTGCACAGATTGCTCAAGgtgtagacat ... ttatttgcagCTCTATCTGTCGA
EST: GCTTATCAAGAATCATCCAAAGAGAAAAGACGTGCACAGATTGCTCAAG CTCTATCTGTCGAGGTCACTGTTGTACCTCCCTCTAGGCTGATGGCTTTGAEST: gi|18356245|gb|BJ188304.1|BJ188304
genomic: GCTTATCAAGAATCATCCAAAGAGAAAAGACGTGCACAGATTGCTCAAGgtgtagacat ... ttatttgcagCTCTATCTGTCGAGGTCACTGTTGTACCTCCCTCTAGGCTGATGGCTTTGA
EST: GCTTATCAAGAATCATCCAAAGAGAAAAGACGTGCACAGATTGCTCAAG CTCTATCTGTCGAGGTCACTGTTGTACCTCCCTCTANGCTGATGGCTTTGAEST: gi|100450837|gb|CJ974464.1|CJ974464
genomic: GCTTATCAAGAATCATCCAAAGAGAAAAGACGTGCACAGATTGCTCAAGgtgtagacat ... ttatttgcagCTCTATCTGTCGAGGTCACTGTTGTACCTCCCTCTAGGCTGATGGCTTTGA
EST: GCTTATCANGAATCATCCAAAGAGAAAAGACGTGCACAGATNGCTCAAG CTCTATCTGTCGAGGTCACTGTTGTACCTCCCTCTAGGCTGATGGCTTTGAEST: gi|208377120|gb|DC940820.1|DC940820
genomic: GCTTATCAAGAATCATCCAAAGAGAAAAGACGTGCACAGATTGCTCAAGgtgtagacat ... ttatttgcagCTCTATCTGTCGAGGTCACTGTTGTACCTCCCTCTAGGCTGATGGCTTTGA
EST: GCTTATCAAGAATCATCCAAAGAGAAAAGACGTGCACAGATTGCTCAAG CTCTATCTGTCGAGGTCACTGTTGTACCTCCCTCTAGGCTGATGGCTTTGAEST: gi|18350111|gb|BJ182162.1|BJ182162
genomic: GCTTATCAAGAATCATCCAAAGAGAAAAGACGTGCACAGATTGCTCAAGgtgtagacat ... ttatttgcagCTCTATCTGTCGAGGTCACTGTTGTACCTCCCTCTAGGCTGATGGCTTTGA
EST: GCTTATCAAGAATCATCCAAAGAGAAAAGACGTGCACAGATTGCTCAAG CTCTATCTGTCGAGGTCACTGTTGTACCTCCCTCTANGCTGATGGCTTTGA
genomic: GCTTATCAAGAATCATCCAAAGAGAAAAGACGTGCACAGATTGCTCAAGgtgtagacat ... ttatttgcagCTCTATCTGTCGAGGTCACTGTTGTACCTCCCTCTAGGCTGATGGCTTTGA
aattttgattgttaaaattttagtatcgttaaattgaagtatgctttatttgcagCTCTATCTGTCGAGGTCACTGTTGTACCTCCCTCTAGGCTGATGGCTTTGATTGGTCAGGCATTAAAATGGCAACAACATCAAG
ttttgat putative branch site (score: 2)
ctttattt putative PPT
attgttaaaattttag TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtagacatagttttcttctcgagctctctctagcatcgctcaaaacttttccgtctgcgtggctgagttttttaatatcatgttttaaaaattttgattgttaaaattttagtatcgttaaattgaagtatgctttatttgcagCTCTATCTGTCGAGGTCACTGTTGTACCTCCCTCTAGGCTGATGGCTTTGATTGGTCAGGCATTAAAATGGCAACAACATCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT