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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttgctatctttttatttgagagtcactgtgctaagaatcactgtatgttatcgagtatctcgtgatacattctagaaactctttgattttttttttgcagTACCCAAATCCTATGAAGACGAAGTTGCATTTACTCGTCAACTTGAGGAGGAGGAACAGGTTCTAGAACTAGGGCGTCGGCGCTTGACTGATCTGCATTT

Basic information

species Physcomitrella patens
transcript PP1S31_251V6.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162209786|gb|FC385720.1|FC385720
EST:     GTTTGTACAGAGCCGCAGTATTGATGGCAAGGATTTCGATTATCACGCAG                         TACCCAAATCCTATGAAGACGAAGTTGCATTTACTCGTCAACTTGAGGAGG
genomic: GTTTGTACAGAGCCGCAGTATTGATGGCAAGGATTTCGATTATCACGCAGgtgtgatgtt ... ttttttgcagTACCCAAATCCTATGAAGACGAAGTTGCATTTACTCGTCAACTTGAGGAGG
EST: gi|162242461|gb|FC418960.1|FC418960
EST:     GTTTGTACAGAGCCGCAGTATTGATGGCAAGGATTTCGATTATCACGCAG                         TACCCAAATCCTATGAAGACGAAGTTGCATTTACTCGTCAACTTGAGGAGG
genomic: GTTTGTACAGAGCCGCAGTATTGATGGCAAGGATTTCGATTATCACGCAGgtgtgatgtt ... ttttttgcagTACCCAAATCCTATGAAGACGAAGTTGCATTTACTCGTCAACTTGAGGAGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttatcgagtatctcgtgatacattctagaaactctttgattttttttttgcagTACCCAAATCCTATGAAGACGAAGTTGCATTTACTCGTCAACTTGAGGAGGAGGAACAGGTTCTAGAACTAGGGCGTCGGCGCTTGACTGATCTGCATTT
                                   ctttgat  putative branch site (score: 5)
                                 ctctttgatttttttt  CT-rich tract
                              aaactctttgattttt  TA-rich tract