1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tgtgttttaacttgatgtttttgatattctggataattgaagcgtatgtgtttgtttctcaattcttggttcttgcctaagtcgtgttttctcctaacagATCGATCTTGTTAAAGAATCTGAGGTGGAGTCGATGATGCGGCGAATAAAG
species | Physcomitrella patens |
transcript | PP1S31_130V6.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ATGAGGCTGTGGAACAAATCGCTTATGCGGATCGCATTATTTTGAACAAG ATCGATCTTGTTAAAGAATCTGAGGTGGAGTCGATGATGCGGCGAATAAAGEST: gi|208374619|gb|DC948619.1|DC948619
genomic: ATGAGGCTGTGGAACAAATCGCTTATGCGGATCGCATTATTTTGAACAAGgtattctact ... ctcctaacagATCGATCTTGTTAAAGAATCTGAGGTGGAGTCGATGATGCGGCGAATAAAG
EST: ATGAGGCTG-GGAACNAATCGCTTATGCGGATCGCATTA-TTTGAACAAG ATCGATCTTGTTAAAGAATCTGAGGTGGAGTCGATGATGCGGCGAATAAAGEST: gi|208351971|gb|DC925780.1|DC925780
genomic: ATGAGGCTGTGGAACAAATCGCTTATGCGGATCGCATTATTTTGAACAAGgtattctact ... ctcctaacagATCGATCTTGTTAAAGAATCTGAGGTGGAGTCGATGATGCGGCGAATAAAG
EST: ATGAGGCTGTGGAACAAATCGCTTATGCGGATCGCATTATTTTGAACAAG ATCGATCTTGTTAAAGAATCTGAGGTGGAGTCGATGATGCGGCGAATAAAGEST: gi|162184555|gb|FC360029.1|FC360029
genomic: ATGAGGCTGTGGAACAAATCGCTTATGCGGATCGCATTATTTTGAACAAGgtattctact ... ctcctaacagATCGATCTTGTTAAAGAATCTGAGGTGGAGTCGATGATGCGGCGAATAAAG
EST: ATGAGGCTGTGGAACAAATCGCTTATGCGGATCGCATTATTTTGAACAAG ATCGATCTTGTTAAAGAATCTGAGGTGGAGTCGATGATGCGGCGAATAAAGEST: gi|162156787|gb|FC333599.1|FC333599
genomic: ATGAGGCTGTGGAACAAATCGCTTATGCGGATCGCATTATTTTGAACAAGgtattctact ... ctcctaacagATCGATCTTGTTAAAGAATCTGAGGTGGAGTCGATGATGCGGCGAATAAAG
EST: ATGAGGCTGTGGAACAAATCGCTTATGCGGATCGCATTATTTTGAACAAG ATCGATCTTGTTAAAGAATCTGAGGTGGAGTCGATGATGCGGCGAAATAA-EST: gi|162253297|gb|FC428891.1|FC428891
genomic: ATGAGGCTGTGGAACAAATCGCTTATGCGGATCGCATTATTTTGAACAAGgtattctact ... ctcctaacagATCGATCTTGTTAAAGAATCTGAGGTGGAGTCGATGATGCGGCGAA-TAAA
EST: TGAGGCTGTGGAACAAATCGCTTATGCGGATCGCATTATTTTTGA-CAAG ATCGATCTTGTTAAAGAATCTGAGGTEST: gi|67725452|gb|BJ975711.1|BJ975711
genomic: TGAGGCTGTGGAACAAATCGCTTATGCGGATCGCATTATTTT-GAACAAGgtattctact ... ctcctaacagATCGATCTTGTTAAAGAATCTGAGGT
EST: ATGAGGCTGTGGAACAAATCGCTTATGCGGATCGCATTATTTTGAACAAG ATCGATCTTGTTAAAGAATCTGAGGTGGAGTCGATGATGCGGCGAATAAAGEST: gi|162178673|gb|FC354462.1|FC354462
genomic: ATGAGGCTGTGGAACAAATCGCTTATGCGGATCGCATTATTTTGAACAAGgtattctact ... ctcctaacagATCGATCTTGTTAAAGAATCTGAGGTGGAGTCGATGATGCGGCGAATAAAG
EST: ATGAGGCTGTGGAACAAATCGCTTATGCGGATCGCATTATTTTGAACAAG ATCGATCTTGTTAAAGAATCTGAGGTGGAGTCGATGATGCGGCGAATAAAGEST: gi|162195573|gb|FC371874.1|FC371874
genomic: ATGAGGCTGTGGAACAAATCGCTTATGCGGATCGCATTATTTTGAACAAGgtattctact ... ctcctaacagATCGATCTTGTTAAAGAATCTGAGGTGGAGTCGATGATGCGGCGAATAAAG
EST: ATGAGGCTGTGGAACAAATCGCTTATGCGGATCGCATTATTTTGAACAAG ATCGATCTTGTTEST: gi|162155636|gb|FC331561.1|FC331561
genomic: ATGAGGCTGTGGAACAAATCGCTTATGCGGATCGCATTATTTTGAACAAGgtattctact ... ctcctaacagATCGATCTTGTT
EST: TCGCATTATTTTGAACAAG ATCGATCTTGTTAAAGAATCTGAGGTGGAGTCGATGATGCGGCGAATAAAGEST: gi|208373025|gb|DC948790.1|DC948790
genomic: TCGCATTATTTTGAACAAGgtattctact ... ctcctaacagATCGATCTTGTTAAAGAATCTGAGGTGGAGTCGATGATGCGGCGAATAAAG
EST: CGCATTATTTNGAACCAG ATCGATCTTGTTAAAGAATCTGAGGTGGAGTCGATGATGCGGCGAATAAAGEST: gi|162155637|gb|FC331562.1|FC331562
genomic: CGCATTATTTTGAACAAGgtattctact ... ctcctaacagATCGATCTTGTTAAAGAATCTGAGGTGGAGTCGATGATGCGGCGAATAAAG
EST: ATGAGGCTGTGGAACAAATCGCTTATGCGGATCGCATTATTTTGAACAAG ATCGATCTTGTTAAAGAATCTGAGGTGGAGTCGATGATGCGGCGAATAAAGEST: gi|37827407|gb|BJ585419.1|BJ585419
genomic: ATGAGGCTGTGGAACAAATCGCTTATGCGGATCGCATTATTTTGAACAAGgtattctact ... ctcctaacagATCGATCTTGTTAAAGAATCTGAGGTGGAGTCGATGATGCGGCGAATAAAG
EST: ATCGCATTATTTNGANCAAG ATCGATCTTGTTAAAGAATCTGAGGTGGAGTCGATGATGCGGCGAATAAAGEST: gi|162162411|gb|FC339168.1|FC339168
genomic: ATCGCATTATTTTGAACAAGgtattctact ... ctcctaacagATCGATCTTGTTAAAGAATCTGAGGTGGAGTCGATGATGCGGCGAATAAAG
EST: TGCGGATCGCATTATTTTGAACAAG ATCGATCTTGTTAAAGAATCTGAGGTGGAGTCGATGATGCGGCGAATAAAGEST: gi|162162262|gb|FC338044.1|FC338044
genomic: TGCGGATCGCATTATTTTGAACAAGgtattctact ... ctcctaacagATCGATCTTGTTAAAGAATCTGAGGTGGAGTCGATGATGCGGCGAATAAAG
EST: ATGAGGCTGTGGAACAAATCGCTTATGCGGATCGCATTATTTTGAACAAG ATCGATCTTGTTAAAGAATCTGAGGTGGAGTCGATGATGCGGCGAATAAAGEST: gi|162178674|gb|FC354463.1|FC354463
genomic: ATGAGGCTGTGGAACAAATCGCTTATGCGGATCGCATTATTTTGAACAAGgtattctact ... ctcctaacagATCGATCTTGTTAAAGAATCTGAGGTGGAGTCGATGATGCGGCGAATAAAG
EST: ATGAGGCTGTGGAACAAATCGCTTATGCGGATCGCATTATTTTGAACAAG ATCGATCTTGTTAAAGAATCTGAGGTGGAGTCGATGATGCGGCGAATAAAGEST: gi|162157524|gb|FC333782.1|FC333782
genomic: ATGAGGCTGTGGAACAAATCGCTTATGCGGATCGCATTATTTTGAACAAGgtattctact ... ctcctaacagATCGATCTTGTTAAAGAATCTGAGGTGGAGTCGATGATGCGGCGAATAAAG
EST: ATGAGGCTGTGGAACAAATCGCTTATGCGGATCGCATTATTTTGAACAAG ATCGATCTTGTTAAAGAATCTGAGGTGGAGTCGATGATGCGGCGAATAAAGEST: gi|162187277|gb|FC363227.1|FC363227
genomic: ATGAGGCTGTGGAACAAATCGCTTATGCGGATCGCATTATTTTGAACAAGgtattctact ... ctcctaacagATCGATCTTGTTAAAGAATCTGAGGTGGAGTCGATGATGCGGCGAATAAAG
EST: ATGAGGCTGTGGAACAAATCGCTTATGCGGATCGCATTATTTTGAACAAG ATCGATCTTGTTAAAGAATCTGAGGTGGAGTCGATGATGCGGEST: gi|162269789|gb|FC445657.1|FC445657
genomic: ATGAGGCTGTGGAACAAATCGCTTATGCGGATCGCATTATTTTGAACAAGgtattctact ... ctcctaacagATCGATCTTGTTAAAGAATCTGAGGTGGAGTCGATGATGCGG
EST: ATGAGGCTGTGGAACAAATCGCTTATGCGGATCGCATTATTTTGAACAAG ATCGATCTTGTTAAAGAATCTGAGGTGGAGTCGATGATGCGGCGAATAAAGEST: gi|162269788|gb|FC445656.1|FC445656
genomic: ATGAGGCTGTGGAACAAATCGCTTATGCGGATCGCATTATTTTGAACAAGgtattctact ... ctcctaacagATCGATCTTGTTAAAGAATCTGAGGTGGAGTCGATGATGCGGCGAATAAAG
EST: ATGAGGCTGTGGAACAAATCGCTTATGCGGATCGCATTATTTTGAACAAG ATCGATCTTGTTAAAGAATCTGAGGTGGAGTCGATGATGCGGCGAATAAAG
genomic: ATGAGGCTGTGGAACAAATCGCTTATGCGGATCGCATTATTTTGAACAAGgtattctact ... ctcctaacagATCGATCTTGTTAAAGAATCTGAGGTGGAGTCGATGATGCGGCGAATAAAG
atgtgtttgtttctcaattcttggttcttgcctaagtcgtgttttctcctaacagATCGATCTTGTTAAAGAATCTGAGGTGGAGTCGATGATGCGGCGAATAAAG
tcgtgttttctcct CT-rich tract
tttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtgttttaacttgatgtttttgatattctggataattgaagcgtatgtgtttgtttctcaattcttggttcttgcctaagtcgtgttttctcctaacagATCGATCTTGTTAAAGAATCTGAGGTGGAGTCGATGATGCGGCGAATAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG