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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgcttaaacggcttttgaacatgtactacgttatacctcaggattgtactgctgaccaggtttctttattttcctttttatttcttgttttattttgcagTCGATATGCTTCTTGCTTGGGATACTTGCAAAAACTTAAACCTCAATTATTACTTGATATTCATCTATACGATCATGTGGGGACATTATATGAACAAATA

Basic information

species Physcomitrella patens
transcript PP1S311_49V6.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37825234|gb|BJ583300.1|BJ583300
EST:     TGCGAGAGCTGATCCATGACTTTTATGCAAG                         TCGATATGCTTCTTGCTTGGGATACTTGCAAAAACTTAACCCTCCAATTAT
genomic: TGCGAGAGCTGATCCATGACTTTTATGCAAGgtacgaatta ... tattttgcagTCGATATGCTTCTTGCTTGGGATACTTGCAAAAACTTAAACCT-CAATTAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtactgctgaccaggtttctttattttcctttttatttcttgttttattttgcagTCGATATGCTTCTTGCTTGGGATACTTGCAAAAACTTAAACCTCAATTATTACTTGATATTCATCTATACGATCATGTGGGGACATTATATGAACAAATA
    tgctgac  putative branch site (score: 2)
               tttctttattttcctt  putative PPT
               tttctttattttcctt  TA-rich tract