1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtacaacgttaaccacctgccgcttcctcttgtcatgctagtgctgggaataattgtcgatggatgtaacagaacgtcactatgcacacctacttacaaggcgcgtcttgattttcggttgcaactataatgcagtaaagtaatgaaatttttgttcttctgaagGTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCAAGTCCGTGAGAGGCTGCATCGTTAGTCCCGATCTGTCAGTACTGAATCT
species | Physcomitrella patens |
transcript | PP1S311_33V6.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAG GTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCAEST: gi|37831873|gb|BJ589885.1|BJ589885
genomic: AGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAGgtacaacgtt ... tcttctgaagGTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCA
EST: AGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAG GTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCAEST: gi|162220470|gb|FC396007.1|FC396007
genomic: AGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAGgtacaacgtt ... tcttctgaagGTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCA
EST: GTGTGCAACTGCTGATGCACCGAG GTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCAEST: gi|162245074|gb|FC422926.1|FC422926
genomic: GTGTGCAACTGCTGATGCACCGAGgtacaacgtt ... tcttctgaagGTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCA
EST: AGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAG GTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCAEST: gi|162220469|gb|FC396006.1|FC396006
genomic: AGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAGgtacaacgtt ... tcttctgaagGTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCA
EST: GCAACTGCTGATGCACCGAG GTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCAEST: gi|37844063|gb|BJ602071.1|BJ602071
genomic: GCAACTGCTGATGCACCGAGgtacaacgtt ... tcttctgaagGTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCA
EST: AGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAG GTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCAEST: gi|162206668|gb|FC382426.1|FC382426
genomic: AGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAGgtacaacgtt ... tcttctgaagGTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCA
EST: AGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAG GTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCA
genomic: AGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAGgtacaacgtt ... tcttctgaagGTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCA
attttcggttgcaactataatgcagtaaagtaatgaaatttttgttcttctgaagGTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCAAGTCCGTGAGAGGCTGCATCGTTAGTCCCGATCTGTCAGTACTGAATCT
tcttgat putative branch site (score: 4)
tttttgttcttct putative PPT
taaagtaatgaaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacaacgttaaccacctgccgcttcctcttgtcatgctagtgctgggaataattgtcgatggatgtaacagaacgtcactatgcacacctacttacaaggcgcgtcttgattttcggttgcaactataatgcagtaaagtaatgaaatttttgttcttctgaagGTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCAAGTCCGTGAGAGGCTGCATCGTTAGTCCCGATCTGTCAGTACTGAATCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG