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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaagctcttcagttgatcttcagaatgcacaatgaatagtgtacttgaattaagatcttattggatctgtgtttcggcgatcatactttgtttatttttcagAGTCGGGAAGCCAAGAGAAGATTCGAATTGGAATCAATGGGTGTGGGAGGATTGGAAGACTTGTTCTCCGTGTCATCCTCGCCAGGGACGATGTCGAAGT

Basic information

species Physcomitrella patens
transcript PP1S309_84V6.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100416916|gb|BY993152.1|BY993152
EST:     GTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGTGAGAACAACAA                         AGTCGGGAAGCCAAGAGAAGATTCGAATTGGAATCAATGGGTGTGGGAGGA
genomic: GTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGTGAGAACAACAAgtaaagctct ... tatttttcagAGTCGGGAAGCCAAGAGAAGATTCGAATTGGAATCAATGGGTGTGGGAGGA
EST: gi|18364854|gb|BJ196927.1|BJ196927
EST:     GTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGTGAGAACAACAA                         AGTCGGGAAGC
genomic: GTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGTGAGAACAACAAgtaaagctct ... tatttttcagAGTCGGGAAGC
EST: gi|67712630|gb|BJ966079.1|BJ966079
EST:     GTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGTGAGAACAACAA                         AGTCGGGAAGCCAAGAGAAGATTCGAATTGGAATCAATGGGTGTGGGAGGA
genomic: GTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGTGAGAACAACAAgtaaagctct ... tatttttcagAGTCGGGAAGCCAAGAGAAGATTCGAATTGGAATCAATGGGTGTGGGAGGA
EST: gi|18364847|gb|BJ196920.1|BJ196920
EST:     GTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGTGAGAACAACAA                         AGTCGGGAAGCCAAGAGAAGATTCGAATTGGAATCAATGGGTGTGGGAGGA
genomic: GTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGTGAGAACAACAAgtaaagctct ... tatttttcagAGTCGGGAAGCCAAGAGAAGATTCGAATTGGAATCAATGGGTGTGGGAGGA
EST: gi|18367853|gb|BJ199936.1|BJ199936
EST:     GTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGTGAGAACAACAA                         AGTCGGGAAGCCAAGAGAAGATTCGAATTGGAATCAATGGGTGTGGGAGGA
genomic: GTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGTGAGAACAACAAgtaaagctct ... tatttttcagAGTCGGGAAGCCAAGAGAAGATTCGAATTGGAATCAATGGGTGTGGGAGGA
EST: gi|18357408|gb|BJ189467.1|BJ189467
EST:     GTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGTGAGAACAACAA                         AGTCGGGAAGCCAAGAGAAGATTCGAATTGGAATCAATGGGTGTGGGAGGA
genomic: GTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGTGAGAACAACAAgtaaagctct ... tatttttcagAGTCGGGAAGCCAAGAGAAGATTCGAATTGGAATCAATGGGTGTGGGAGGA
EST: gi|18331326|gb|BJ163336.1|BJ163336
EST:     GTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGTGAGAACAACAA                         AGTCGGGAAGCCAAGAGAAGATTCGAATTGGAATCAATGGGTGTGGGAGGA
genomic: GTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGTGAGAACAACAAgtaaagctct ... tatttttcagAGTCGGGAAGCCAAGAGAAGATTCGAATTGGAATCAATGGGTGTGGGAGGA
EST: gi|208361278|gb|DC930864.1|DC930864
EST:     GTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGTGAGAACAACAA                         AGTCGGGAAGCCAAGAGAAGATTCGAATTGGAATCAATGGGTGTGGGAGGG
genomic: GTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGTGAGAACAACAAgtaaagctct ... tatttttcagAGTCGGGAAGCCAAGAGAAGATTCGAATTGGAATCAATGGGTGTGGGAGG-
EST: gi|208353409|gb|DC938686.1|DC938686
EST:     GTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGTGAGAACAACAA                         AGTCGGGAAGCCAAGAGAAGATTCGAATTGGAATCAATGGGTGTGGGAGGA
genomic: GTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGTGAGAACAACAAgtaaagctct ... tatttttcagAGTCGGGAAGCCAAGAGAAGATTCGAATTGGAATCAATGGGTGTGGGAGGA
EST: gi|67709777|gb|BJ965593.1|BJ965593
EST:     GTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGTGAGAACAACAA                         AGTCGGGAAGCCAAGAGAAGATTCGAATTGGAATCAATGGGTGTGGGAGGA
genomic: GTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGTGAGAACAACAAgtaaagctct ... tatttttcagAGTCGGGAAGCCAAGAGAAGATTCGAATTGGAATCAATGGGTGTGGGAGGA
EST: gi|100418832|gb|BY975761.1|BY975761
EST:     GTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGTGAGAACAACAA                         AGTCGGGAAGCCAAGAGAAGATTCGAATTGGAATCAATGGGTGTGGGAGGA
genomic: GTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGTGAGAACAACAAgtaaagctct ... tatttttcagAGTCGGGAAGCCAAGAGAAGATTCGAATTGGAATCAATGGGTGTGGGAGGA
EST: gi|208370793|gb|DC936197.1|DC936197
EST:     GTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGTGAGAACAACAA                         AGTCGGGAAGCCCAGAGAAGATTCGAATTGGAATCAATGGGTGTGGGAGGA
genomic: GTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGTGAGAACAACAAgtaaagctct ... tatttttcagAGTCGGGAAGCCAAGAGAAGATTCGAATTGGAATCAATGGGTGTGGGAGGA
EST: gi|18356323|gb|BJ188382.1|BJ188382
EST:     GTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGTGAGAACAACAA                         AGTCGGGAAGCCAAGAGAAGATTCGAATTGGAATCAATGGGTGTGGGAGGA
genomic: GTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGTGAGAACAACAAgtaaagctct ... tatttttcagAGTCGGGAAGCCAAGAGAAGATTCGAATTGGAATCAATGGGTGTGGGAGGA
EST: gi|100391292|gb|BY971583.1|BY971583
EST:     GTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGTGAGAACAACAA                         AGTCGGGAAGCCAAGAGAAGATTCGAATTGGAATCAATGGGTGTGGGAGGA
genomic: GTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGTGAGAACAACAAgtaaagctct ... tatttttcagAGTCGGGAAGCCAAGAGAAGATTCGAATTGGAATCAATGGGTGTGGGAGGA
EST: gi|18345809|gb|BJ177852.1|BJ177852
EST:     GTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGTGAGAACAACAA                         AGTCGGGAAGCCAAGAGAAGATTCGAATTGGAATCAATGGGTGTGGGAGGA
genomic: GTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGTGAGAACAACAAgtaaagctct ... tatttttcagAGTCGGGAAGCCAAGAGAAGATTCGAATTGGAATCAATGGGTGTGGGAGGA
EST: gi|67702657|gb|BJ962890.1|BJ962890
EST:     GTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGTGAGAACAACAA                         AGTCGGGAAGCC
genomic: GTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGTGAGAACAACAAgtaaagctct ... tatttttcagAGTCGGGAAGCC
EST: gi|67704163|gb|BJ964396.1|BJ964396
EST:     GTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGTGAGAACAACAA                         AGTCGGGAAGCCAAGAGAAGATTCGAATTGGAATCAATGGGTGTGGGAGGA
genomic: GTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGTGAGAACAACAAgtaaagctct ... tatttttcagAGTCGGGAAGCCAAGAGAAGATTCGAATTGGAATCAATGGGTGTGGGAGGA
EST: gi|208389928|gb|DC937759.1|DC937759
EST:     GTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGTGAGAACAACAA                         AGTCGGGAAGCCAAGAGAAGATTCGAATTGGAATCAATGGGTGTGGGAGGA
genomic: GTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGTGAGAACAACAAgtaaagctct ... tatttttcagAGTCGGGAAGCCAAGAGAAGATTCGAATTGGAATCAATGGGTGTGGGAGGA
EST: gi|18359051|gb|BJ191111.1|BJ191111
EST:     GTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGTGAGAACAACAA                         AGTCGGGAAGCCAAGAGAAGATTCGAATTGGAATCAATGGGTGTGGGAGGA
genomic: GTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGTGAGAACAACAAgtaaagctct ... tatttttcagAGTCGGGAAGCCAAGAGAAGATTCGAATTGGAATCAATGGGTGTGGGAGGA
EST: gi|208393363|gb|DC942475.1|DC942475
EST:     GTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGTGAGAACAACAA                         AGTCGGGAAGCCAAGAGAAGATTCGAATTGGAATCAATGGGTGTGGGAGGA
genomic: GTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGTGAGAACAACAAgtaaagctct ... tatttttcagAGTCGGGAAGCCAAGAGAAGATTCGAATTGGAATCAATGGGTGTGGGAGGA
EST: gi|18353233|gb|BJ185288.1|BJ185288
EST:     GTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGTGAGAACAACAA                         AGTCGGGAAGCCAAGAGAAGATTCGAATTGGAATCAATGGGTGTGGGAGGA
genomic: GTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGTGAGAACAACAAgtaaagctct ... tatttttcagAGTCGGGAAGCCAAGAGAAGATTCGAATTGGAATCAATGGGTGTGGGAGGA
EST: gi|67716800|gb|BJ967059.1|BJ967059
EST:     GTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGTGAGAACAACAA                         AGTCGGGAAGCCAAGAGAAGATTCGAATTGGAATCAATGGGTGTGGGAGGA
genomic: GTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGTGAGAACAACAAgtaaagctct ... tatttttcagAGTCGGGAAGCCAAGAGAAGATTCGAATTGGAATCAATGGGTGTGGGAGGA
EST: gi|18351302|gb|BJ183354.1|BJ183354
EST:     GTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGTGAGAACAACAA                         AGTCGGGAAGCCAAGAGAAGATTCGAATTGGAATCAATGGGTGTGGGAGGA
genomic: GTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGTGAGAACAACAAgtaaagctct ... tatttttcagAGTCGGGAAGCCAAGAGAAGATTCGAATTGGAATCAATGGGTGTGGGAGGA
EST: gi|100370194|gb|BY985289.1|BY985289
EST:     GTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGTGAGAACAACAA                         AGTCGGGAAGCCAAGAGAAGATTCGAATTGGAATCAATGGGTGTGGGAGGA
genomic: GTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGTGAGAACAACAAgtaaagctct ... tatttttcagAGTCGGGAAGCCAAGAGAAGATTCGAATTGGAATCAATGGGTGTGGGAGGA
EST: gi|100407403|gb|BY991684.1|BY991684
EST:     GTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGTGAGAACAACAA                         AGTCGGGAAGCCAAGAGAAGATTCGAATTGGAATCAGTGGGTGTGGGAGGA
genomic: GTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGTGAGAACAACAAgtaaagctct ... tatttttcagAGTCGGGAAGCCAAGAGAAGATTCGAATTGGAATCAATGGGTGTGGGAGGA
EST: gi|18374342|gb|BJ205920.1|BJ205920
EST:     GTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGTGAGAACAACAA                         AGTCGGGAAGCCAAGAGAAGATTCGAATTGGAATCAATGGGTGTGGGAGGA
genomic: GTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGTGAGAACAACAAgtaaagctct ... tatttttcagAGTCGGGAAGCCAAGAGAAGATTCGAATTGGAATCAATGGGTGTGGGAGGA
EST: gi|100450224|gb|CJ974156.1|CJ974156
EST:     GTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGTGAGAACAACAA                         AGTCGGGAAGCCAAGAGAAGATTCGAATTGGAATCAATGGGTGTGGGAGGA
genomic: GTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGTGAGAACAACAAgtaaagctct ... tatttttcagAGTCGGGAAGCCAAGAGAAGATTCGAATTGGAATCAATGGGTGTGGGAGGA
EST: gi|100390873|gb|BY989356.1|BY989356
EST:     GTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGTGAGAACAACAA                         AGTCGGGAAGCCAAGAGAAGATTCGAATTGGAATCAATGGGTGTGGGAGGA
genomic: GTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGTGAGAACAACAAgtaaagctct ... tatttttcagAGTCGGGAAGCCAAGAGAAGATTCGAATTGGAATCAATGGGTGTGGGAGGA
EST: gi|67719585|gb|BJ969844.1|BJ969844
EST:     GTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGTGAGAACAACAA                         AGTCGGGAAGCCAAGAGAAGATTCGAATTGGAATCAATGGGTGTGGGAGGA
genomic: GTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGTGAGAACAACAAgtaaagctct ... tatttttcagAGTCGGGAAGCCAAGAGAAGATTCGAATTGGAATCAATGGGTGTGGGAGGA
EST: gi|162271003|gb|FC447408.1|FC447408
EST:     GTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGTGAGAACAACAA                         AGTCGGGAAGCCAAGAGAAGATTCGAATTGGAATCAATGGGTGTGGGAGGA
genomic: GTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGTGAGAACAACAAgtaaagctct ... tatttttcagAGTCGGGAAGCCAAGAGAAGATTCGAATTGGAATCAATGGGTGTGGGAGGA
EST: gi|18352108|gb|BJ184162.1|BJ184162
EST:     GTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGTGAGAACAACAA                         AGTCGGGAAGCCAAGAGAAGATTCGAATTGGAATCAATGGGTGTGGGAGGA
genomic: GTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGTGAGAACAACAAgtaaagctct ... tatttttcagAGTCGGGAAGCCAAGAGAAGATTCGAATTGGAATCAATGGGTGTGGGAGGA
EST: gi|208357982|gb|DC943080.1|DC943080
EST:     GTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGTGAGAACAACAA                         AGTCGGGAAGCCAAGAGAAGATTCGAATTGGAATCAATGGGTGTGGGAGGA
genomic: GTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGTGAGAACAACAAgtaaagctct ... tatttttcagAGTCGGGAAGCCAAGAGAAGATTCGAATTGGAATCAATGGGTGTGGGAGGA
EST: gi|100388397|gb|BY951999.1|BY951999
EST:     GTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGTGAGAACAACAA                         AGTCGGGAAGCCAAGAGAAGATTCGAATTGGAATCAATGGGTGTGGGAGGA
genomic: GTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGTGAGAACAACAAgtaaagctct ... tatttttcagAGTCGGGAAGCCAAGAGAAGATTCGAATTGGAATCAATGGGTGTGGGAGGA
EST: gi|100409472|gb|BY992028.1|BY992028
EST:     GTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGTGAGAACAACAA                         AGTCGGGAAGCCAAGAGAAGATTCGAATTGGAATCAATGGGTGTGGGAGGA
genomic: GTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGTGAGAACAACAAgtaaagctct ... tatttttcagAGTCGGGAAGCCAAGAGAAGATTCGAATTGGAATCAATGGGTGTGGGAGGA
EST: gi|18362200|gb|BJ194270.1|BJ194270
EST:     GTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGTGAGAACAACAA                         AGTCGGGAAGCCAAGAGAAGATTCGAATTGGAATCAATGGGTGTGGGAGGA
genomic: GTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGTGAGAACAACAAgtaaagctct ... tatttttcagAGTCGGGAAGCCAAGAGAAGATTCGAATTGGAATCAATGGGTGTGGGAGGA
EST: gi|208389902|gb|DC937733.1|DC937733
EST:     GTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGTGAGAACAACAA                         AGTCGGGAAGCCAAGAGAAGATTCGAATTGGAATCAATGGGTGTGGGAGGA
genomic: GTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGTGAGAACAACAAgtaaagctct ... tatttttcagAGTCGGGAAGCCAAGAGAAGATTCGAATTGGAATCAATGGGTGTGGGAGGA
EST: gi|18367755|gb|BJ199838.1|BJ199838
EST:     GTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGTGAGAACAACAA                         AGTCGGGAAGCCAAGAGAAGATTCGAATTGGAATCAATGGGTGTGGGAGGA
genomic: GTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGTGAGAACAACAAgtaaagctct ... tatttttcagAGTCGGGAAGCCAAGAGAAGATTCGAATTGGAATCAATGGGTGTGGGAGGA
EST: gi|18371268|gb|BJ202870.1|BJ202870
EST:     GTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGTGAGAACAACAA                         AGTCGGGAAGCCAAGAGAAGATTCGAATTGGAATCAATGGGTGTGGGAGGA
genomic: GTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGTGAGAACAACAAgtaaagctct ... tatttttcagAGTCGGGAAGCCAAGAGAAGATTCGAATTGGAATCAATGGGTGTGGGAGGA
EST: gi|100408961|gb|BY974303.1|BY974303
EST:     GTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGTGAGAACAACAA                         AGTCGGGAAGCCAAGAGAAGATTCGAATTGGAATCAATGGGTGTGGGAGGA
genomic: GTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGTGAGAACAACAAgtaaagctct ... tatttttcagAGTCGGGAAGCCAAGAGAAGATTCGAATTGGAATCAATGGGTGTGGGAGGA
EST: gi|208389487|gb|DC942194.1|DC942194
EST:     GTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGTGAGAACAACAA                         AGTCGGGAAGCCAAGAGAAGATTCGAATTGGAATCAATGGGTGTGGGAGGA
genomic: GTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGTGAGAACAACAAgtaaagctct ... tatttttcagAGTCGGGAAGCCAAGAGAAGATTCGAATTGGAATCAATGGGTGTGGGAGGA
EST: gi|67717293|gb|BJ967552.1|BJ967552
EST:     GTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGTGAGAACAACAA                         AGTCGGGAAGCCAAGAGAAGATTCGAATTGGAATCAATGGGTGTGGGAGGA
genomic: GTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGTGAGAACAACAAgtaaagctct ... tatttttcagAGTCGGGAAGCCAAGAGAAGATTCGAATTGGAATCAATGGGTGTGGGAGGA
EST: gi|208389270|gb|DC933298.1|DC933298
EST:     GTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGTGAGAACAACAA                         AGTCGGGAAGCCAAGAGAAGATTCGAATTGGAATCAATGGGTGTGGGAGGA
genomic: GTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGTGAGAACAACAAgtaaagctct ... tatttttcagAGTCGGGAAGCCAAGAGAAGATTCGAATTGGAATCAATGGGTGTGGGAGGA
EST: gi|67709719|gb|BJ965535.1|BJ965535
EST:     GTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGTGAGAACAACAA                         AGTCGGGAAGCCAAGAGAAGATTCGAATTGGAATCAATGGGTGTGGGAGGA
genomic: GTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGTGAGAACAACAAgtaaagctct ... tatttttcagAGTCGGGAAGCCAAGAGAAGATTCGAATTGGAATCAATGGGTGTGGGAGGA
EST: gi|18325917|gb|BJ157916.1|BJ157916
EST:     GTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGTGAGAACAACAA                         AGTCGGGAAGCCAAGAGAAGATTCGAATTGGAATCAATGGGTGTGGGAGGA
genomic: GTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGTGAGAACAACAAgtaaagctct ... tatttttcagAGTCGGGAAGCCAAGAGAAGATTCGAATTGGAATCAATGGGTGTGGGAGGA
EST: gi|67701666|gb|BJ961899.1|BJ961899
EST:     GTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGTGAGAACAACAA                         AGTCGGGAAGCCAAGAGAAGATTCGAATTGGAATCAATGGGTGTGGGAG
genomic: GTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGTGAGAACAACAAgtaaagctct ... tatttttcagAGTCGGGAAGCCAAGAGAAGATTCGAATTGGAATCAATGGGTGTGGGAG
EST: gi|208367329|gb|DC939859.1|DC939859
EST:     GTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGTGAGAACAACAA                         AGTCGGGAAGCCAAGAGAAGATTCGAATTGGAATCAATGGGTGTGGGAGGA
genomic: GTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGTGAGAACAACAAgtaaagctct ... tatttttcagAGTCGGGAAGCCAAGAGAAGATTCGAATTGGAATCAATGGGTGTGGGAGGA
EST: gi|67710128|gb|BJ965863.1|BJ965863
EST:     GTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGTGAGAACAACAA                         AGTCGGGAAGCCAGGAGAAGATTCGAATTGGAATCAATGGGTGTGGGAGGA
genomic: GTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGTGAGAACAACAAgtaaagctct ... tatttttcagAGTCGGGAAGCCAAGAGAAGATTCGAATTGGAATCAATGGGTGTGGGAGGA
EST: gi|208366788|gb|DC940102.1|DC940102
EST:     GTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGTGAGAACAACAA                         AGTCGGGAAGCCAAGAGAAGATTCGAATTGGAATCAATGGGTGTGGGAGGA
genomic: GTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGTGAGAACAACAAgtaaagctct ... tatttttcagAGTCGGGAAGCCAAGAGAAGATTCGAATTGGAATCAATGGGTGTGGGAGGA
EST: gi|100435098|gb|BY979071.1|BY979071
EST:     GTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGTGAGAACAACAA                         AGTCGGGAAGCCAAGAGAAGATTCGAATTGGAATCAATGGGTGTGGGAGGA
genomic: GTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGTGAGAACAACAAgtaaagctct ... tatttttcagAGTCGGGAAGCCAAGAGAAGATTCGAATTGGAATCAATGGGTGTGGGAGGA
EST: gi|18348603|gb|BJ180652.1|BJ180652
EST:     GTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGTGAGAACAACAA                         AGTCGGGAAGCCAAGAGAAGATTCGAATTGGAATCAATGGGTGTGGGAGGA
genomic: GTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGTGAGAACAACAAgtaaagctct ... tatttttcagAGTCGGGAAGCCAAGAGAAGATTCGAATTGGAATCAATGGGTGTGGGAGGA
EST: gi|67717669|gb|BJ967928.1|BJ967928
EST:     GTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGTGAGAACAACAA                         AGTCGGGAAGCCAAGAGAAGATTCGAATTGGAATCAATGGGTGTGGGAGGA
genomic: GTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGTGAGAACAACAAgtaaagctct ... tatttttcagAGTCGGGAAGCCAAGAGAAGATTCGAATTGGAATCAATGGGTGTGGGAGGA
EST: gi|18342424|gb|BJ174459.1|BJ174459
EST:     GTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGTGAGAACAACAA                         AGTCGGGAAGCCAAGAGAAGATTCGAATTGGAATCAATGGGTGTGGGAGGA
genomic: GTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGTGAGAACAACAAgtaaagctct ... tatttttcagAGTCGGGAAGCCAAGAGAAGATTCGAATTGGAATCAATGGGTGTGGGAGGA
EST: gi|208387109|gb|DC941281.1|DC941281
EST:     GTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGTGAGAACAACAA                         AGTCGGGAAGCCAAGAGAAGATTCGAATTGGAATCAATGGGTGTGGGAGGA
genomic: GTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGTGAGAACAACAAgtaaagctct ... tatttttcagAGTCGGGAAGCCAAGAGAAGATTCGAATTGGAATCAATGGGTGTGGGAGGA
EST: gi|100388056|gb|BY988529.1|BY988529
EST:     GTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGTGAGAACAACAA                         AGTCGGGAAGCCAAGAGAAGATTCGAATTGGAATCAATGGGTGTGGGAGGA
genomic: GTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGTGAGAACAACAAgtaaagctct ... tatttttcagAGTCGGGAAGCCAAGAGAAGATTCGAATTGGAATCAATGGGTGTGGGAGGA
EST: gi|100410315|gb|BY992045.1|BY992045
EST:     GTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGTGAGAACAACAA                         AGTCGGGAAGCCAAGAGAAGATTCGAATTGGAATCAATGGGTGTGGGAGGA
genomic: GTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGTGAGAACAACAAgtaaagctct ... tatttttcagAGTCGGGAAGCCAAGAGAAGATTCGAATTGGAATCAATGGGTGTGGGAGGA
EST: gi|67573346|gb|BJ946170.1|BJ946170
EST:     GTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGTGAGAACAACAA                         AGTCGGGAAGCCAAGAGAAGATTCGAATTGGAATCAATGGGTGTGGGAGGA
genomic: GTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGTGAGAACAACAAgtaaagctct ... tatttttcagAGTCGGGAAGCCAAGAGAAGATTCGAATTGGAATCAATGGGTGTGGGAGGA
EST: gi|67709425|gb|BJ965241.1|BJ965241
EST:     GTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGTGAGAACAACAA                         AGTCGGGAAGCCAAGAGAAGATTCGAATTGGAATCAATGGGTGTGGGAGGA
genomic: GTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGTGAGAACAACAAgtaaagctct ... tatttttcagAGTCGGGAAGCCAAGAGAAGATTCGAATTGGAATCAATGGGTGTGGGAGGA
EST: gi|208375286|gb|DC940439.1|DC940439
EST:     GTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGTGAGAACAACAA                         AGTCGGGAAGCCAAGAGAAGATTCGAATTGGAATCAATGGGTGTGGGAGGA
genomic: GTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGTGAGAACAACAAgtaaagctct ... tatttttcagAGTCGGGAAGCCAAGAGAAGATTCGAATTGGAATCAATGGGTGTGGGAGGA
EST: gi|67717837|gb|BJ968096.1|BJ968096
EST:     GTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGTGAGAACAACAA                         AGTCGGGAAGCCAAGAGAAGATTCGAATTGGAATCAATGGGTGTGGGAGGA
genomic: GTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGTGAGAACAACAAgtaaagctct ... tatttttcagAGTCGGGAAGCCAAGAGAAGATTCGAATTGGAATCAATGGGTGTGGGAGGA
EST: gi|100424875|gb|BY976860.1|BY976860
EST:     GTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGTGAGAACAACAA                         AGTCGGGAAGCCAAGAGAAGATTCGAATTGGAATCAATGGGTGTGGGAGGA
genomic: GTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGTGAGAACAACAAgtaaagctct ... tatttttcagAGTCGGGAAGCCAAGAGAAGATTCGAATTGGAATCAATGGGTGTGGGAGGA
EST: gi|18327000|gb|BJ159001.1|BJ159001
EST:     GTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGTGAGAACAACAA                         AGTCGGGAAGCCAAGAGAAGATTCGAATTGGAATCAATGGGTGTGGGAGGA
genomic: GTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGTGAGAACAACAAgtaaagctct ... tatttttcagAGTCGGGAAGCCAAGAGAAGATTCGAATTGGAATCAATGGGTGTGGGAGGA
EST: gi|208394373|gb|DC942533.1|DC942533
EST:     GTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGTGAGAACAACAA                         AGTCGGGAAGCCAAGAGAAGATTCGAATTGGAATCAATGGGTGTGGGAGGA
genomic: GTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGTGAGAACAACAAgtaaagctct ... tatttttcagAGTCGGGAAGCCAAGAGAAGATTCGAATTGGAATCAATGGGTGTGGGAGGA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 34 (upstream exon), 35 (downstream exon)
Score: 17

GTCGATTAGCAGGTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGTGAGAACAACAAgtaaagctct ... tatttttcagAGTCGGGAAGCCAAGAGAAGATTCGAATTGGAATCAATGGGTGTGGGAGGATTGGAAGACTTGTTCTCCGTGTCATCCTCGCCAGGGACGATGTCGAAGT




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aattaagatcttattggatctgtgtttcggcgatcatactttgtttatttttcagAGTCGGGAAGCCAAGAGAAGATTCGAATTGGAATCAATGGGTGTGGGAGGATTGGAAGACTTGTTCTCCGTGTCATCCTCGCCAGGGACGATGTCGAAGT
                                      ctttgtttatttttc  CT-rich tract
                                   atactttgtttatttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaaagctcttcagttgatcttcagaatgcacaatgaatagtgtacttgaattaagatcttattggatctgtgtttcggcgatcatactttgtttatttttcagAGTCGGGAAGCCAAGAGAAGATTCGAATTGGAATCAATGGGTGTGGGAGGATTGGAAGACTTGTTCTCCGTGTCATCCTCGCCAGGGACGATGTCGAAGT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAAGA