1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtgagaatgatcccaagaaaacctgttgtaatccagttcagtggaggttgttttaaacctttgttacaactgcaatgtcaacgaactcaagaatgtccttaattcttttttgtttccagAGTCAGGCAGCCAGGAGAAAGTTCGAATTGGAATCAACGGTTGTGGGAGAATCGGAAGACTTGTTCTCCGTGTTATCCTCGCCAGGGACGATGTCGAAGT
species | Physcomitrella patens |
transcript | PP1S309_73V6.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ATGCAGTACAACGAGGGCCACAGCGACTGAGTTCCCCACTAAGACTACGA AGTCAGGCAGCCAGGAGAAAGTTCGAATTGGAATCAACGGTTGTGGGAGAAEST: gi|208362133|gb|DC943532.1|DC943532
genomic: ATGCAGTACAACGAGGGCCACAGCGACTGAGTTCCCCACTAAGACTACGAgtgagaatga ... ttgtttccagAGTCAGGCAGCCAGGAGAAAGTTCGAATTGGAATCAACGGTTGTGGGAGAA
EST: ATGCAGTACAACGAGGGCCACAGCGACTGAGTTCCCCACTAAGACTACGA AGTCAGGCAGCCAGGAGAAAGTTCGAATTGGAATCAACGGTTGTGGGAGAAEST: gi|162156177|gb|FC332552.1|FC332552
genomic: ATGCAGTACAACGAGGGCCACAGCGACTGAGTTCCCCACTAAGACTACGAgtgagaatga ... ttgtttccagAGTCAGGCAGCCAGGAGAAAGTTCGAATTGGAATCAACGGTTGTGGGAGAA
EST: ATGCAGTACAACGAGGGCCACAGCGACTGAGTTCCCCACTAAGACTACGA AGTCAGGCAGCCAGGAGAAAGTTCGAATTGGAATCAACGGTTGTGGGAGAAEST: gi|18328635|gb|BJ160640.1|BJ160640
genomic: ATGCAGTACAACGAGGGCCACAGCGACTGAGTTCCCCACTAAGACTACGAgtgagaatga ... ttgtttccagAGTCAGGCAGCCAGGAGAAAGTTCGAATTGGAATCAACGGTTGTGGGAGAA
EST: ATGCAGTACAACGAGGGCCACAGCGACTGAGTTCCCCACTAAGACTACGA AGTCAGGCAGCCAGGAGAAAGTTCGAATTGGAATCAACGGTTGTGGGAGAAEST: gi|162268832|gb|FC445680.1|FC445680
genomic: ATGCAGTACAACGAGGGCCACAGCGACTGAGTTCCCCACTAAGACTACGAgtgagaatga ... ttgtttccagAGTCAGGCAGCCAGGAGAAAGTTCGAATTGGAATCAACGGTTGTGGGAGAA
EST: ATGCAGTACAACGAGGGCCACAGCGACTGAGTTCCCCACTAAGACTACGA AGTCAGGCAGCCAGGAGAAAGTTCGAATTGGAATCAACGGTTGTGGGAGAAEST: gi|18330269|gb|BJ162275.1|BJ162275
genomic: ATGCAGTACAACGAGGGCCACAGCGACTGAGTTCCCCACTAAGACTACGAgtgagaatga ... ttgtttccagAGTCAGGCAGCCAGGAGAAAGTTCGAATTGGAATCAACGGTTGTGGGAGAA
EST: ATGCAGTACAACGAGGGCCACAGCGACTGAGTTCCCCACTAAGACTACGA AGTCAGGCAGCCAGGAGAAAGTTCGAATTGGAATCAACGGTTGTGGGAGAAEST: gi|67701881|gb|BJ962114.1|BJ962114
genomic: ATGCAGTACAACGAGGGCCACAGCGACTGAGTTCCCCACTAAGACTACGAgtgagaatga ... ttgtttccagAGTCAGGCAGCCAGGAGAAAGTTCGAATTGGAATCAACGGTTGTGGGAGAA
EST: ATGCAGTACAACGAGGGCCACAGCGACTGAGTTCCTCACTAAGACTACGA AGTCAGGCAGCCAGGAGGAAGTTCGAA
genomic: ATGCAGTACAACGAGGGCCACAGCGACTGAGTTCCCCACTAAGACTACGAgtgagaatga ... ttgtttccagAGTCAGGCAGCCAGGAGAAAGTTCGAA
tacaactgcaatgtcaacgaactcaagaatgtccttaattcttttttgtttccagAGTCAGGCAGCCAGGAGAAAGTTCGAATTGGAATCAACGGTTGTGGGAGAATCGGAAGACTTGTTCTCCGTGTTATCCTCGCCAGGGACGATGTCGAAGT
ccttaat putative branch site (score: 4)
tccttaattctttttt CT-rich tract
ttaattcttttttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagaatgatcccaagaaaacctgttgtaatccagttcagtggaggttgttttaaacctttgttacaactgcaatgtcaacgaactcaagaatgtccttaattcttttttgtttccagAGTCAGGCAGCCAGGAGAAAGTTCGAATTGGAATCAACGGTTGTGGGAGAATCGGAAGACTTGTTCTCCGTGTTATCCTCGCCAGGGACGATGTCGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA