1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtgccagctcatgttcaatttatcgccgatcaccttggtttctatccgctttacgcttctattggacttggaaaacattgaatcttaaatgattgaagtatatttcgtagactgaatcgagaacctaatgaatcttttgggatctgccagCCATGGAATTCGGACAGGTGTGTTGGAAGCTAGCAAGCTTCTCTTAAAAAACGTTGGACCAGATCTTTCTGATCTTCAG
species | Physcomitrella patens |
transcript | PP1S2_777V6.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CGGGGCATGTATCGTGGATCTATTCCAGCAATACTAGGTCAATTTACCAG CCATGGAATTCGGACAGGTGTGTTGGAAGCTAGCAAGCTTCTCTTAAAAAAEST: gi|162162891|gb|FC339258.1|FC339258
genomic: CGGGGCATGTATCGTGGATCTATTCCAGCAATACTAGGTCAATTTACCAGgtgccagctc ... gatctgccagCCATGGAATTCGGACAGGTGTGTTGGAAGCTAGCAAGCTTCTCTTAAAAAA
EST: CGGGGCATGTATCGTGGATCTATTCCAGCAATACTAGGTCAATTTACCAG CCATGGAATTCGGACAGGTGTGTTGGAAGCTAGCAAGCTTCTCTTAAAAAAEST: gi|100448647|gb|CJ972946.1|CJ972946
genomic: CGGGGCATGTATCGTGGATCTATTCCAGCAATACTAGGTCAATTTACCAGgtgccagctc ... gatctgccagCCATGGAATTCGGACAGGTGTGTTGGAAGCTAGCAAGCTTCTCTTAAAAAA
EST: CGGGGCATGTATCGTGGATCTATTCCAGCAATACTAGGTCAATTTACCAG CCATGGAATTCGGACAGGTGTGTTGGAAGCTAGCAAGCTTCTCTTAAAAAAEST: gi|162151261|gb|FC327715.1|FC327715
genomic: CGGGGCATGTATCGTGGATCTATTCCAGCAATACTAGGTCAATTTACCAGgtgccagctc ... gatctgccagCCATGGAATTCGGACAGGTGTGTTGGAAGCTAGCAAGCTTCTCTTAAAAAA
EST: CGGGGCATGTATCGTGGATCTATTCCAGCAATACTAGGTCAATTTACCAG CCATGGAATTCGGACAGGTGTGTTGGAAGCTAGCAAGCTTCTCTTAAAAAA
genomic: CGGGGCATGTATCGTGGATCTATTCCAGCAATACTAGGTCAATTTACCAGgtgccagctc ... gatctgccagCCATGGAATTCGGACAGGTGTGTTGGAAGCTAGCAAGCTTCTCTTAAAAAA
aagtatatttcgtagactgaatcgagaacctaatgaatcttttgggatctgccagCCATGGAATTCGGACAGGTGTGTTGGAAGCTAGCAAGCTTCTCTTAAAAAACGTTGGACCAGATCTTTCTGATCTTCAG
acctaat putative branch site (score: 3)
taatgaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgccagctcatgttcaatttatcgccgatcaccttggtttctatccgctttacgcttctattggacttggaaaacattgaatcttaaatgattgaagtatatttcgtagactgaatcgagaacctaatgaatcttttgggatctgccagCCATGGAATTCGGACAGGTGTGTTGGAAGCTAGCAAGCTTCTCTTAAAAAACGTTGGACCAGATCTTTCTGATCTTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT