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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgatttaatccgttttatcttagttttcggccatttacatttgcctaggaataagtgtccgacttctatgcataattgggactcaagttattttattcacattctattatctcttgcctcttcctcgctattcactagcctgacgcgcacgtttttatgtaatcaacagCGATGCAAGCACTTCGAGATTGGTGGAGACAAGAAGGGGAAAGGAACACAACTCTTTTAGATATAATGCTTTACTTTGTATTCCGAGAAATTATGAAGCA

Basic information

species Physcomitrella patens
transcript PP1S2_415V6.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S2_415V6.1 (Physcomitrella patens), 3'ss of exon 4
lower sequence: LOC_Os07g33921.1 (Oryza sativa), 3'ss of exon 3
gtgatttaatccgttttatcttagttttcggccatttacatttgcctaggaataagtgtccgacttctatgcataattgggactcaagtt--attttattcacattctattatctcttgcctcttcctcgctattcactagcctgacgcgcacgtttttatgtaatcaacagCGATGCAAGCACTTCGAGATTGGTGGAGACAAGAAGGGGAAAGGAACACAACTCTTTTAGATATAATGCTTTACTTTGTATTCCGAGAAATTATGAAGCA-
                                                                 |   | |||  |   |||||||| |  |  || |    | || || |      |  ||||  | | | |    | |       |  || || ||||    |  |||| | |||||||| |||||||||||||||||||||||||| || ||||||   || || || |     | ||  |   || | |  | |    |||   ||  
--------------------------------------------------------------gtattatttcattgtcaagactcaagctgaaaattgtcatgaatcaatca------gtatctttttagatgt--gttgggtgctatcttacattattattc--tttacagAGGTGCAAGCATTTCGAGATTGGTGGAGACAAGAAGGGCAAGGGAACATCTCTTTTCTAAACTACCTACTGGATACTGAAGTT-GTGGGTCTATTGTGCTT

upper sequence: PP1S2_415V6.1 (Physcomitrella patens), 3'ss of exon 4
lower sequence: LOC_Os07g33979.1 (Oryza sativa), 3'ss of exon 3
gtgatttaatccgttttatcttagttttcggccatttacatttgcctaggaataagtgtccgacttctatgcataattgggactcaagttattttattcacattctattatctcttgcctcttcctcgctattcactagcctgacgcgcacgtttttatgtaatcaacagCGATGCAAGCACTTCGAGATTGGTGGAGACAAGAAGGGGAAAGGAACACAACTCTTTTAGATATAATGCTTTACTTTGTATTCCGAGAAATTATGAAGCA
                                                                 |   | |||  |   ||||| ||   |   | | |   |  || ||   ||      | || | | |     |  || ||  |||   ||    ||  ||  ||| | |||||||| |||||||||||||||||||||||||| || ||||||   || || ||                                         
--------------------------------------------------------------gtattatttcattgtcaagactccagagctgaaaattatcatgaatcattattt------tgctggatgtgttggatgctcacttgcataatt----gttctctgcagAGGTGCAAGCATTTCGAGATTGGTGGAGACAAGAAGGGCAAGGGAACATCTCTTTTCTAA----------------------------------------

upper sequence: PP1S2_415V6.1 (Physcomitrella patens), 3'ss of exon 4
lower sequence: LOC_Os07g33880.1 (Oryza sativa), 3'ss of exon 3
gtgatttaatccgttttatcttagttttcggccatttacatttgcctaggaataagtgtccgacttctatgcataattgggactcaagttattttattcacattctattatctcttgcctcttcctcgctattcactagcctgacgcgcacgtttttatgtaatcaacagCGATGCAAGCACTTCGAGATTGGTGGAGACAAGAAGGGGAAAGGAACACAACTCTTTTAGATATAATGCTTTACTTTGTATTCCGAGAAATTATGAAGCA-
                                                                 |   | |||  |   ||||| ||   |   | | |   |  || ||   ||      | || | | |     |  || ||  |||   ||    ||  ||  ||| | |||||||| |||||||||||||||||||||||||| || ||||||   || || || ||    ||||      || || |  | |  |  ||    | 
--------------------------------------------------------------gtattatttcattgtcaagactccagagctgaaaattatcatgaatcattattt------tgctggatgtgttggatgctcacttgcataatt----gttctctgcagAGGTGCAAGCATTTCGAGATTGGTGGAGACAAGAAGGGCAAGGGAACATCTCTTTTCTAAATTGCTTGCTACCTACTGGATACT-ATAGTTGTTGGTCTAC

upper sequence: PP1S2_415V6.1 (Physcomitrella patens), 3'ss of exon 4
lower sequence: GRMZM2G125527_T02 (Zea mays), 3'ss of exon 3
gtgatttaatccgttttatcttagttttcggccatttacatttgcctaggaataagtgtccgacttctatgcataattgggactcaagttatt-ttattcacattctattatctcttgcctcttcctcgctattcactagcctgacgcgcacgtttttatgtaatcaacagCGATGCAAGCACTTCGAGATTGGTGGAGACAAGAAGGGGAAAGGAACACAACTCTTTTAGATATAATGCTTTACTTTGTATTCCGAGAAATTATGAAGCA
                                                              |||    ||  |     |  || || ||  |  |   || |   | || ||  |||  | |  ||| || ||  ||  |            |   | ||| |    ||| |||||||||| || ||||||||||||||||||||||| || || |||   || || ||    |   |     || | |  |    ||  | | |  |  
------------------------------------------------------------gtactgtcttgattctcccgtgctaaacttgctgctgaacaaagcat-ttctccattggttatagctcactctttgctgac------------tccctgtgtca----cagAGATGCAAGCATTTTGAGATTGGTGGAGACAAGAAGGGCAAGGGCACATCTCTTTTCTAAGCTTCTCGTCCACCTGTCTGGTTGTTGAGTTGAAGCTGTG

upper sequence: PP1S2_415V6.1 (Physcomitrella patens), 3'ss of exon 4
lower sequence: GRMZM2G009412_T02 (Zea mays), 3'ss of exon 3
gtgatttaatccgttttatcttagttttcggccatttacatttgcctaggaataagtgtccgacttctatgcataattgggactcaagttattttattcacattctattatctc--ttgcctcttcctcgctattcactagcctgacgcgcacgtttttatgtaatcaacagCGATGCAAGCACTTCGAGATTGGTGGAGACAAGAAGGGGAAAGGAACACAACTCTTTTAGATATA--ATGCTTTACTTTGTATTCCGAGAAATTATGAAGCA
                                                         || |    |||   |||  |   |  | | | |   |  | ||||   |||| ||||  ||   | |  ||| || ||  ||  | |||| | |  || |           |||| | |||||||| || ||||||||||||||||||||||| || ||||||   ||||| ||  | |   ||     |  | |   |  ||   |   ||  |  
---------------------------------------------------------gtgcagtgtct---cattttcctgtgttaggcttgctgttgcacaaagtattgtctcactttgatttagctcactctttcctgac-tgactcacctgtgtc----------acagAGGTGCAAGCATTTTGAGATTGGTGGAGACAAGAAGGGCAAGGGAACATCTCTCTTCTAAGTTTCTCATCGCCCATCTCGATGTTGGATCGAACCTGTGG--

upper sequence: PP1S2_415V6.1 (Physcomitrella patens), 3'ss of exon 4
lower sequence: GLYMA08G19320.1 (Glycine max), 3'ss of exon 3
gtgatttaatccgttttatcttagttttcggccatttacatttgcctaggaataagtgtccgacttctatgcataattgggactcaagttattttattcacattctattatctcttgcctcttcctcgctattcactagcctgacgcgcacgtttttatgtaatcaacagCGATGCAAGCACTTCGAGATTGGTGGAGACAAGAAGGGGAAAGGAACACAACTCTTTTAGATATAATGCTTTACTTTGTATTCCGAGAAATTATGAAGCA--
                                                                     |   ||  ||| |  |||   | |   || |  |  |  | |  | ||   ||   | |||| |   | |      |   | ||| || ||       ||| | ||||||||||| ||||||||||| ||||||||||| || ||||||   || || ||| |       |    || | |       |  ||    ||||  
--------------------------------------------------------------------gttagtatatggtaaacaaaacaatggtttaaagtggttgtttggcatgtg-ctgtgtggctaatggtttgttcc-tgtctatgttgttgtg-------cagAGGTGCAAGCACTTTGAGATTGGTGGTGACAAGAAGGGCAAGGGAACATCTCTGTTCTAGTTTGCGAATTAGGATTCGCAGCTTTTTATGTTTC--AGCAAT

upper sequence: PP1S2_415V6.1 (Physcomitrella patens), 3'ss of exon 4
lower sequence: GLYMA15G05670.2 (Glycine max), 3'ss of exon 3
gtgatttaatccgttttatcttagttttcggccatttacatttgcctaggaataagtgtccgacttctatgcataattgggactcaagttattttattcacattctattatctcttgcctcttcctcgctattcactagcc-tgacgcgcacgtttttatgtaatcaacagCGATGCAAGCACTTCGAGATTGGTGGAGACAAGAAGGGGAAAGGAACACAACTCTTTTAGATATAATGCTTTACTTTGTATTCCGAGAAATTATGAAGCA
                                                                                         ||| |      || |  ||  | | |||  ||    | |    |  |||    |     |  | | | |||||  |   ||| | ||||||||||| ||||||||||| ||||||||||| || ||||||  |||||| ||| |  |    |    |||  |     |    | |  ||   
----------------------------------------------------------------------------------------gtatatggaaagcaatggatgcttttttggttccatgtggtgtgtggctaatggttgttagttcctgtctatgttgt--gcagAGGTGCAAGCACTTTGAGATTGGTGGTGACAAGAAGGGCAAGGGAACATCACTCTTCTAGTTTGAGAATTAGGATTTAGAGCTTTATGTTTCAGCAATGT

upper sequence: PP1S2_415V6.1 (Physcomitrella patens), 3'ss of exon 4
lower sequence: GLYMA15G05670.1 (Glycine max), 3'ss of exon 3
gtgatttaatccgttttatcttagttttcggccatttacatttgcctaggaataagtgtccgacttctatgcataattgggactcaagttattttattca---cattctattatctcttgcctcttcctcgctattcactagcc-tgacgcgcacgtttttatgtaatcaacagCGATGCAAGCACTTCGAGATTGGTGGAGACAAGAAGGGGAAAGGAACACAACTCTTTTAGATATAATGCTTTACTTTGTATTCCGAGAAATTATGAAGCA
                                                                                       |||| | |||  |   || |  ||  | | |||  ||    | |    |  |||    |     |  | | | |||||  |   ||| | ||||||||||| ||||||||||| ||||||||||| || ||||||  |||||| ||| |  |    |    |||  |     |    | |  ||   
---------------------------------------------------------------------------------------gttagtatatggaaagcaatggatgcttttttggttccatgtggtgtgtggctaatggttgttagttcctgtctatgttgt--gcagAGGTGCAAGCACTTTGAGATTGGTGGTGACAAGAAGGGCAAGGGAACATCACTCTTCTAGTTTGAGAATTAGGATTTAGAGCTTTATGTTTCAGCAATGT

upper sequence: PP1S2_415V6.1 (Physcomitrella patens), 3'ss of exon 4
lower sequence: GLYMA05G24930.1 (Glycine max), 3'ss of exon 3
gtgatttaatccgttttatcttagttttcggccatttacatttgcctaggaataagtgtccgacttctatgcataattgggactcaagt--tattttattcacattctattatctcttgcctcttcctcgctattcactagcctgacgcgcacgtttttatg-taatcaacagCGATGCAAGCACTTCGAGATTGGTGGAGACAAGAAGGGGAAAGGAACACAACTCTTTTAGATATAATGCTTTACTTTGTATTCCGAGAAATTATGAAGCA-
                                                                         || ||  | |||||    || |||   |||    |   |    |   |  | ||    |   |||  |  ||| ||   |  | |  |  |  |   ||| | ||||||||||| ||||| ||||| ||||||||||| |||||||||   ||||| |||||  |||  |  | |||| | |   | | | | |   | | 
-------------------------------------------------------------------------tacttttgcctcaaacagtaattttgccactgattcccaaacatgctcattgccgttttgaacacgtggttgatgcttgctatgtggttctgttttgcagAGGTGCAAGCACTTTGAGATCGGTGGTGACAAGAAGGGAAAAGGAACATCTCTCTTCTAGATGGAATATTAGAATTTGCAATTTCACACACTCTCT-GTAC

upper sequence: PP1S2_415V6.1 (Physcomitrella patens), 3'ss of exon 4
lower sequence: GLYMA08G19320.2 (Glycine max), 3'ss of exon 3
gtgatttaatccgttttatcttagttttcggccatttacatttgcctaggaataagtgtccgacttctatgcataattgggactcaagttattttattcacattctattatctcttgcctcttcctcgctattcactagcctgacgcgcacgtttttatgtaatcaacagCGATGCAAGCACTTCGAGATTGGTGGAGACAAGAAGGGGAAAGGAACACAACTCTTTTAGAT-----ATAATGCTTTAC-----TTTGTATTCCGAGAAATTATGAAGCA-----------------------
                                                                     |   ||  ||| |  |||   | |   || |  |  |  | |  | ||   ||   | |||| |   | |      |   | ||| || ||       ||| | ||||||||||| ||||||||||| ||||||||||| || ||||||   || || ||| |     || | | ||  |     ||| | || |   ||  |  ||| |                        
--------------------------------------------------------------------gttagtatatggtaaacaaaacaatggtttaaagtggttgtttggcatgtg-ctgtgtggctaatggtttgttcc-tgtctatgttgttgtg-------cagaggtgcaagcactttgagattggtggtgacaagAAGGGCAAGGGAACATCTCTGTTCTAGTTTGCGAATTAGGATTCGCAGCTTTTTATGTTTCAGCAATGTTGGAATCTTTTAGTTTCTCTCTGGATTTTTC

upper sequence: PP1S2_415V6.1 (Physcomitrella patens), 3'ss of exon 4
lower sequence: AT4G14320.1 (Arabidopsis thaliana), 3'ss of exon 3
gtgatttaatccgttttatcttagttttcggccatttacatttgcctaggaataagtgtccgacttctatgcataattgggactcaagttattttattcacattctattatctcttgcctcttcctcgctattcactagcctgacgcgcacgtttt-tatgtaatca--acagCGATGCAAGCACTTCGAGATTGGTGGAGACAAGAAGGGGAAAGGAACACAACTCTTTTAGATATAATGCTTTA-CTTTGTATTCCGAGAAATTATGAAGCA
                                                                                       || || |     ||||||| ||| || |||    |  |||  || || |    |||   |  ||  ||| | |||  |     ||| | ||||||||||| ||||| ||||||||||||||||| || ||||||   ||||||||  | |  || || | || | || |        || ||     
---------------------------------------------------------------------------------------gtaatgtctgcgacattct-ttacct-ttgttaatcactctttagtctcagttctgtttcttacactttgtgtgtggtttttgcagAGGTGCAAGCACTTTGAGATCGGTGGAGACAAGAAGGGAAAGGGAACATCTCTCTTTTAAGT-TGTTGTTTCATCTATCTACTTTTTTTTGTTTTGTTTGG

upper sequence: PP1S2_415V6.1 (Physcomitrella patens), 3'ss of exon 4
lower sequence: AT3G23390.1 (Arabidopsis thaliana), 3'ss of exon 3
gtgatttaatccgttttatcttagttttcggccatttacatttgcctaggaataagtgtccgacttctatgcataattgggactcaagttattttattcacattctattatctcttgcctcttcctcgctattcactagcctgacgcgcacgtttttatgtaatcaacagCGATGCAAGCACTTCGAGATTGGTGGAGACAAGAAGGGGAAAGGAACACAACTCTTTTAGATATAATGCTTTACTTTGTATTCCGAGAAATTATGAAGCA---
                                                                     ||||||    | ||  |  | | || ||| | |    |||      ||   |||    |  |||  ||  | |   |      || || | || |   ||| | |||||||| |||||||| ||||| ||||||||||| || ||||||   || |||||  |     | || |  || | ||| | ||  ||   |       
--------------------------------------------------------------------gtgcata----gaacatagatcagttcatt-ataccggatt------tgtaacttg---gtaatttgcttacattgtgttggt-ttgttgtttattt--cagAGGTGCAAGCATTTCGAGATCGGTGGTGACAAGAAGGGAAAGGGAACATCTCTGTTTTAAGTTG---GTTTCATCTTATTTTCTGCGATTTTTGTACTTGCTG

upper sequence: PP1S2_415V6.1 (Physcomitrella patens), 3'ss of exon 4
lower sequence: EDP05070 (Chlamydomonas reinhardtii), 3'ss of exon 4
---------------------gtgatttaatccgttt-tatcttagttttcggcc---atttacatttgcctaggaataagtgtccgacttctatgcataattgggact-caagtta---ttttattcacattctattatctcttgcctcttcctcgctattcactagcctgacgcgcacgtttttatgtaatcaacagCGATGCAAGCACTTCGAGATTGGTGGAGACAAGAAGGGGAAAGGAACACAACTCTTTTAGATAT-AATGCTTTACTTTGTATTCCGAGAAATTATGAAGCA-
                     | |   | || || ||      |   ||  |||    ||  ||| |   |  |    |    |  | ||    ||   ||  |  | | ||||  |     || | | | | |      |  | ||||||  |  ||  ||| ||   ||    ||| ||    | | |   | |||||| ||||||||||||||||| ||||| |||||||||  |   | |||  |||         ||     | ||      || |  ||||      ||| ||| 
gtgggtggggcgccagatgtggggcactgatacgcttgcgggctgtgttgtggcacggatcaacagtaaaccggacgaagcattgtggctggggtggggaagcgacagtacaagccagcaacttgtgcccgtgcatgcgccagtggcctctgac--gccgttcgctccgctccaacgctcgcccgt-tcttccccacagCGCTGCAAGCACTTCGAGATCGGTGGTGACAAGAAGAAGG--GCAACTAAACGTGGCGGCCTACCGGCGGTTAGGAACGTGTAACGAGTCCGCGTGAGGCAA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15261417|gb|BI436727.1|BI436727
EST:     TGAGGTTGCAGTGTCAGGCTTGCAAGCACGTGACACAACATCCCATTAAG                         CGATGCAAGCACTTCGAGATTGGTGGAGACAAGAAGGGGAAAGGAACACAA
genomic: TGAGGTTGCAGTGTCAGGCTTGCAAGCACGTGACACAACATCCCATTAAGgtgatttaat ... taatcaacagCGATGCAAGCACTTCGAGATTGGTGGAGACAAGAAGGGGAAAGGAACACAA
EST: gi|162194481|gb|FC371121.1|FC371121
EST:     TGAGGTTGCAGTGTCAGGCTTGCAAGCACGTGACACAACATCCCATTAAG                         CGATGCAAGCACTTCGAGATTGGTGGAGACAAGAAGGGGAAAGGAACACAA
genomic: TGAGGTTGCAGTGTCAGGCTTGCAAGCACGTGACACAACATCCCATTAAGgtgatttaat ... taatcaacagCGATGCAAGCACTTCGAGATTGGTGGAGACAAGAAGGGGAAAGGAACACAA
EST: gi|19790233|gb|BQ041766.1|BQ041766
EST:     TGAGGTTGCAGTGTCAGGCTTGCAAGCACGTGACACAACATCCCATTAAG                         CGATGCAAGCACTTCGAGATTGGTGGAGACAAGAAGGGGAAAGGAACACAA
genomic: TGAGGTTGCAGTGTCAGGCTTGCAAGCACGTGACACAACATCCCATTAAGgtgatttaat ... taatcaacagCGATGCAAGCACTTCGAGATTGGTGGAGACAAGAAGGGGAAAGGAACACAA
EST: gi|18360544|gb|BJ192607.1|BJ192607
EST:     TGAGGTTGCAGTGTCAGGCTTGCAAGCACGTGACACAACATCCCATTAAG                         CGATGCAAGCACTTCGAGATTGGTGGAGACAAGAAGGGGAAAGGAACACAA
genomic: TGAGGTTGCAGTGTCAGGCTTGCAAGCACGTGACACAACATCCCATTAAGgtgatttaat ... taatcaacagCGATGCAAGCACTTCGAGATTGGTGGAGACAAGAAGGGGAAAGGAACACAA
EST: gi|18369452|gb|BJ201539.1|BJ201539
EST:     TGAGGTTGCAGTGTCAGGCTTGCAAGCACGTGACACAACATCCCATTAAG                         CGATGCAAGCACTTCGAGATTGGTGGAGACAAGAAGGGGAAAGGAACACAA
genomic: TGAGGTTGCAGTGTCAGGCTTGCAAGCACGTGACACAACATCCCATTAAGgtgatttaat ... taatcaacagCGATGCAAGCACTTCGAGATTGGTGGAGACAAGAAGGGGAAAGGAACACAA
EST: gi|6227524|gb|AW156123.1|AW156123
EST:     TGAGGTTGCAGTGTCAGGCTTGCAAGCACGTGACACAACATCCCATTAAG                         CGATGCAAGCACTTCGAGATTGGTGGAGACAAGAAGGGGAAAGGAACACAA
genomic: TGAGGTTGCAGTGTCAGGCTTGCAAGCACGTGACACAACATCCCATTAAGgtgatttaat ... taatcaacagCGATGCAAGCACTTCGAGATTGGTGGAGACAAGAAGGGGAAAGGAACACAA
EST: gi|37838261|gb|BJ596269.1|BJ596269
EST:     TGAGGTTGCAGTGTCAGGCTTGCAAGCACGTGACACAACATCCCATTAAG                         CGATGCAAGCACTTCGAGATTGGTGGAGACAAGAAGGGGAAAGGAACACAA
genomic: TGAGGTTGCAGTGTCAGGCTTGCAAGCACGTGACACAACATCCCATTAAGgtgatttaat ... taatcaacagCGATGCAAGCACTTCGAGATTGGTGGAGACAAGAAGGGGAAAGGAACACAA
EST: gi|18363955|gb|BJ196028.1|BJ196028
EST:     TGAGGTTGCAGTGTCAGGCTTGCAAGCACGTGACACAACATCCCATTAAG                         CGATGCAAGCACTTCGAGATTGGTGGAGACAAGAAGGGGAAAGGAACACAA
genomic: TGAGGTTGCAGTGTCAGGCTTGCAAGCACGTGACACAACATCCCATTAAGgtgatttaat ... taatcaacagCGATGCAAGCACTTCGAGATTGGTGGAGACAAGAAGGGGAAAGGAACACAA
EST: gi|162230564|gb|FC407154.1|FC407154
EST:     TGAGGTTGCAGTGTCAGGCTTGCAAGCACGTGACACAACATCCCATTAAG                         CGATGCAAGCACTTCGAGATTGGTGGAGACAAGAAGGGGAAAGGAACACAA
genomic: TGAGGTTGCAGTGTCAGGCTTGCAAGCACGTGACACAACATCCCATTAAGgtgatttaat ... taatcaacagCGATGCAAGCACTTCGAGATTGGTGGAGACAAGAAGGGGAAAGGAACACAA
EST: gi|162202251|gb|FC377587.1|FC377587
EST:     TGAGGTTGCAGTGTCAGGCTTGCAAGCACGTGACACAACATCCCATTAAG                         CGATGCAAGCACTTCGAGATTGGTGGAGACAAGAAGGGGAAAGGAACACAA
genomic: TGAGGTTGCAGTGTCAGGCTTGCAAGCACGTGACACAACATCCCATTAAGgtgatttaat ... taatcaacagCGATGCAAGCACTTCGAGATTGGTGGAGACAAGAAGGGGAAAGGAACACAA
EST: gi|162195731|gb|FC371122.1|FC371122
EST:     TGAGGTTGCAGTGTCAGGCTTGCAAGCACGTGACACAACATCCCATTAAG                         CGATGCAAGCACTTCGAGATTGGTGGAGACAAGAAGGGGAAAGGAACACAA
genomic: TGAGGTTGCAGTGTCAGGCTTGCAAGCACGTGACACAACATCCCATTAAGgtgatttaat ... taatcaacagCGATGCAAGCACTTCGAGATTGGTGGAGACAAGAAGGGGAAAGGAACACAA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 34 (upstream exon), 35 (downstream exon)
Score: 48

GCTAAGACTACCAAGAAGATTGTGCTGAGGTTGCAGTGTCAGGCTTGCAAGCACGTGACACAACATCCCATTAAGgtgatttaat ... taatcaacagCGATGCAAGCACTTCGAGATTGGTGGAGACAAGAAGGGGAAAGGAACACAACTCTTTTAGATATAATGCTTTACTTTGTATTCCGAGAAATTATGAAGCA




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcctcttcctcgctattcactagcctgacgcgcacgtttttatgtaatcaacagCGATGCAAGCACTTCGAGATTGGTGGAGACAAGAAGGGGAAAGGAACACAACTCTTTTAGATATAATGCTTTACTTTGTATTCCGAGAAATTATGAAGCA
                       gcctgac  putative branch site (score: 48)
                                     tttttatgtaatcaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgatttaatccgttttatcttagttttcggccatttacatttgcctaggaataagtgtccgacttctatgcataattgggactcaagttattttattcacattctattatctcttgcctcttcctcgctattcactagcctgacgcgcacgtttttatgtaatcaacagCGATGCAAGCACTTCGAGATTGGTGGAGACAAGAAGGGGAAAGGAACACAACTCTTTTAGATATAATGCTTTACTTTGTATTCCGAGAAATTATGAAGCA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGC