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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgtcatctaggatactttagttgcatcaatttcctaatctacaagagttttgtccggagacatgtattttggtgaggtgtgacatacatgtcgatggcagGGTCCAGGCCTATACTACGTGGACAGCGAGGGGGGCAGAGTGAAGGGCACACGCTTCTCTGTTGGATCTGGGTCTACCTACGCATATGGTGTACTCGATA

Basic information

species Physcomitrella patens
transcript PP1S2_300V6.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S2_300V6.1 (Physcomitrella patens), 3'ss of exon 4
lower sequence: Vv01s0010g02900.t01 (Vitis vinifera), 3'ss of exon 5
----tgtcatctaggatactttagttgcatcaatttcctaatctacaagagttttgtccggagacatgtattttggtgaggtgtgacatacatgtcgatggcagGGTCCAGGCCTATACTACGTGGACAGCGAGGGGGGCAGAGTGAAGGGCACACGCTTCTCTGTTGGATCTGGGTCTACCTACGCATATGGTGTACTCGATA
    ||  || | | ||| | |      |||  || ||||   ||  |     |  ||   |    | || |||| || ||| ||                 ||||||| || || || || |||||||| || ||||||||  |||| || ||||| ||||||||||||||||| ||  | || || ||||||||||| ||||
gtaatgagattt-gaatattatgaaatgatcttttgcctatctta--atttcatgatcttaatctgtctactttg-tggggtatg----------------tagGGTCCTGGACTGTATTATGTGGACAGTGAAGGGGGCAGGCTGAAAGGAACACGATTCTCTGTTGGATCTGGTTCGCCTTATGCTTATGGTGTACTGGATA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agttttgtccggagacatgtattttggtgaggtgtgacatacatgtcgatggcagGGTCCAGGCCTATACTACGTGGACAGCGAGGGGGGCAGAGTGAAGGGCACACGCTTCTCTGTTGGATCTGGGTCTACCTACGCATATGGTGTACTCGATA
                atgtatttt  TA-rich tract