1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gttcgtcaacatctattatccgctatatattggtttaggaattttttttcttttcaagtattactacgtcattttttgctgcatggacagtgatttaagtaaaatgtttttaagcaatatgtattccccgtgacggacttgatgtgatggacacagGGTCCTAGGCCTCTTAAGCAATCTGATTTCCTGAGCGTACTGTCAACTGCACGAACGTCGAAAACTGCTGCTTACGAGTATCAGCACAATCGTAGAAGTG
species | Physcomitrella patens |
transcript | PP1S29_307V6.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ATCTATTGGATGAAGAAAGGGCGAACGGTGATGGCCTCGTCGAAGTTAAG GGTCCTAGGCCTCTTAAGCAATCTGATTTCCTGAGCGTACTGTCAACTGCAEST: gi|162244983|gb|FC424941.1|FC424941
genomic: ATCTATTGGATGAAGAAAGGGCGAACGGTGATGGCCTCGTCGAAGTTAAGgttcgtcaac ... atggacacagGGTCCTAGGCCTCTTAAGCAATCTGATTTCCTGAGCGTACTGTCAACTGCA
EST: ATCTATTGGATGAAGAAAGGGCGAACGGTGATGGCCTCGTCGAAGTTAAG GGTCCTAGGCCTCTTAAGCAATCTGATTTCCTGAGCGTACTGTCAACTGCAEST: gi|162256163|gb|FC432219.1|FC432219
genomic: ATCTATTGGATGAAGAAAGGGCGAACGGTGATGGCCTCGTCGAAGTTAAGgttcgtcaac ... atggacacagGGTCCTAGGCCTCTTAAGCAATCTGATTTCCTGAGCGTACTGTCAACTGCA
EST: ATCTATTGGATGAAGAAAGGGCGAACGGTGATGGCCTCGTCGAAGTTAAG GGTCCTAGGCCTCTTAAGCAATCTGATTTCCTGAGCGTACTGTCAACTGCA
genomic: ATCTATTGGATGAAGAAAGGGCGAACGGTGATGGCCTCGTCGAAGTTAAGgttcgtcaac ... atggacacagGGTCCTAGGCCTCTTAAGCAATCTGATTTCCTGAGCGTACTGTCAACTGCA
aaatgtttttaagcaatatgtattccccgtgacggacttgatgtgatggacacagGGTCCTAGGCCTCTTAAGCAATCTGATTTCCTGAGCGTACTGTCAACTGCACGAACGTCGAAAACTGCTGCTTACGAGTATCAGCACAATCGTAGAAGTG
acttgat putative branch site (score: 9)
tttttaagcaatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcgtcaacatctattatccgctatatattggtttaggaattttttttcttttcaagtattactacgtcattttttgctgcatggacagtgatttaagtaaaatgtttttaagcaatatgtattccccgtgacggacttgatgtgatggacacagGGTCCTAGGCCTCTTAAGCAATCTGATTTCCTGAGCGTACTGTCAACTGCACGAACGTCGAAAACTGCTGCTTACGAGTATCAGCACAATCGTAGAAGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT