1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...agtggcagatttactgaaggagaagttctctactctcttttgagttattgaagatgtgtctatgtctcattatgaatatttttcactcctctccctgcagTTATGCGATTGATAAAGTAACTTCAGGACAACGATTGGATTTAAATCTAGAGAGGGG
species | Physcomitrella patens |
transcript | PP1S299_37V6.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GAGTTGGAGAGACTCCGCACTGACATCGACAAGATGCGCAATGAATCCAA TTATGCGATTGATAAAGTAACTTCAGGACAACGATTGGATTTAAATCTAGAEST: gi|208388439|gb|DC957049.1|DC957049
genomic: GAGTTGGAGAGACTCCGCACTGACATCGACAAGATGCGCAATGAATCCAAgtataaagca ... ctccctgcagTTATGCGATTGATAAAGTAACTTCAGGACAACGATTGGATTTAAATCTAGA
EST: GAGTTGGAGAGACTCCGCACTGACATCGACAAGATGCGCAATGAATCCAA TTATGCGATTGATAAAGTAACTTCAGGACAACGATTGGATTTAAATCTAGAEST: gi|208400674|gb|DC908971.1|DC908971
genomic: GAGTTGGAGAGACTCCGCACTGACATCGACAAGATGCGCAATGAATCCAAgtataaagca ... ctccctgcagTTATGCGATTGATAAAGTAACTTCAGGACAACGATTGGATTTAAATCTAGA
EST: GAGTTGGAGAGACTCCGCACTGACATCGACAAGATGCGCAATGAATCCAA TTATGCGATTGATAA-GTAACTTCAGGACAACGATTGGATTTAA-TCTANAEST: gi|208351479|gb|DC921784.1|DC921784
genomic: GAGTTGGAGAGACTCCGCACTGACATCGACAAGATGCGCAATGAATCCAAgtataaagca ... ctccctgcagTTATGCGATTGATAAAGTAACTTCAGGACAACGATTGGATTTAAATCTAGA
EST: GAGTTGGAGAGACTCCGCACTGACATCGACAAGATGCGCAATGAATCCAA TTATGCGATTGATAAAGTAACTTCAGGACAACGATTGGATTTAAATCTAGAEST: gi|208356325|gb|DC957359.1|DC957359
genomic: GAGTTGGAGAGACTCCGCACTGACATCGACAAGATGCGCAATGAATCCAAgtataaagca ... ctccctgcagTTATGCGATTGATAAAGTAACTTCAGGACAACGATTGGATTTAAATCTAGA
EST: GAGTTGGAGAGACTCCGCACTGACATCGACAAGATGCGCAATGAATCCAA TTATGCGATTGATAAAGTAACTTCAGGACAACGATTGGATTTAAATCTAGAEST: gi|208358616|gb|DC949951.1|DC949951
genomic: GAGTTGGAGAGACTCCGCACTGACATCGACAAGATGCGCAATGAATCCAAgtataaagca ... ctccctgcagTTATGCGATTGATAAAGTAACTTCAGGACAACGATTGGATTTAAATCTAGA
EST: GAGTTGGAGAGACTCCGCACTGACATCGACAAGATGCGCAATGAATCCAA TTATGCGATTGATAAAGTAACTTCAGGACAACGATTGGATTTAAATCTAGAEST: gi|37832955|gb|BJ590967.1|BJ590967
genomic: GAGTTGGAGAGACTCCGCACTGACATCGACAAGATGCGCAATGAATCCAAgtataaagca ... ctccctgcagTTATGCGATTGATAAAGTAACTTCAGGACAACGATTGGATTTAAATCTAGA
EST: GAGTTGGAGAGACTCCGCACTGACATCGACAAGATGCGCAATGAATCCAA TTATGCGATTGATAAAGTAACTTCAGGACAACGATTGGATTTAAATCTAGAEST: gi|208378991|gb|DC922837.1|DC922837
genomic: GAGTTGGAGAGACTCCGCACTGACATCGACAAGATGCGCAATGAATCCAAgtataaagca ... ctccctgcagTTATGCGATTGATAAAGTAACTTCAGGACAACGATTGGATTTAAATCTAGA
EST: GAGTTGGAGAGACTCCGCACTGACATCGACAAGATGCGCAATGAATCCAA TTATGCGATTGATAAAGTAACTTCAGGACAACGATTGGATTTAAATCTAGAEST: gi|208370657|gb|DC936145.1|DC936145
genomic: GAGTTGGAGAGACTCCGCACTGACATCGACAAGATGCGCAATGAATCCAAgtataaagca ... ctccctgcagTTATGCGATTGATAAAGTAACTTCAGGACAACGATTGGATTTAAATCTAGA
EST: GAGTTGGAGAGACTCCGCACTGACATCGACAAGATGCGCAATGAATCCAA TTATGCGATTGATAAAGTAACTTCAGGACAACGATTGGATTTAAATCTAGAEST: gi|162208487|gb|FC384450.1|FC384450
genomic: GAGTTGGAGAGACTCCGCACTGACATCGACAAGATGCGCAATGAATCCAAgtataaagca ... ctccctgcagTTATGCGATTGATAAAGTAACTTCAGGACAACGATTGGATTTAAATCTAGA
EST: GAGTTGGAGAGACTCCGCACTGACATCGACAAGATGCGCAATGAATCCAA TTATGCGATTGATAAAGTAACTTCAGGACAACGATTGGATTTAAATCTAGAEST: gi|208345784|gb|DC921025.1|DC921025
genomic: GAGTTGGAGAGACTCCGCACTGACATCGACAAGATGCGCAATGAATCCAAgtataaagca ... ctccctgcagTTATGCGATTGATAAAGTAACTTCAGGACAACGATTGGATTTAAATCTAGA
EST: GAGTTGGAGAGACTCCGCACTGACATCGACAAGATGCGCAATGAATCCAA TTATGCGATTGATAAAGTAACTTCAGGACAACGATTGGATTTAAATCTAGAEST: gi|208386416|gb|DC937083.1|DC937083
genomic: GAGTTGGAGAGACTCCGCACTGACATCGACAAGATGCGCAATGAATCCAAgtataaagca ... ctccctgcagTTATGCGATTGATAAAGTAACTTCAGGACAACGATTGGATTTAAATCTAGA
EST: GAGTTGGAGAGACTCCGCACTGACATCGACAAGATGCGCAATGAATCCAN T-ATGCGATTGATA
genomic: GAGTTGGAGAGACTCCGCACTGACATCGACAAGATGCGCAATGAATCCAAgtataaagca ... ctccctgcagTTATGCGATTGATA
tattgaagatgtgtctatgtctcattatgaatatttttcactcctctccctgcagTTATGCGATTGATAAAGTAACTTCAGGACAACGATTGGATTTAAATCTAGAGAGGGG
tatttttcactcctct CT-rich tract
tcattatgaatatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agtggcagatttactgaaggagaagttctctactctcttttgagttattgaagatgtgtctatgtctcattatgaatatttttcactcctctccctgcagTTATGCGATTGATAAAGTAACTTCAGGACAACGATTGGATTTAAATCTAGAGAGGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG