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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagggatttcgggactgactcatttcactcagctggtagctgcgctgctaagttgtcacaaattactgaaattttctgaattctatttggctgagtgcgcccatgtaacagataacatgtgagattgattatgcggtttcgtttgtggttccagGCTCGAAGTGCCCCTACCGACAGTCTCCGGCCGATGTTTCTCATCATAAATGCCGCAATCTATTTCACTCAG

Basic information

species Physcomitrella patens
transcript PP1S295_30V6.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208354202|gb|DC957422.1|DC957422
EST:     TCACGACATATACTCTTCTAGTGTTGTTCTGGGCCGAAATCTATCATCAG                         GCTCGAAGTGCCCCTACCGACAGTCTCCGGCCGATGTTTCTCATCATAAAT
genomic: TCACGACATATACTCTTCTAGTGTTGTTCTGGGCCGAAATCTATCATCAGgtagggattt ... gtggttccagGCTCGAAGTGCCCCTACCGACAGTCTCCGGCCGATGTTTCTCATCATAAAT
EST: gi|100414507|gb|BY992807.1|BY992807
EST:     TCACGACATATACTCTTCTAGTGTTGTTCTGGGCCGAAATCTATCATCAG                         GCTCGAAGTGCCCCTACCGACAGTCTCCGGCCGATGTTTCTCATCATAAAT
genomic: TCACGACATATACTCTTCTAGTGTTGTTCTGGGCCGAAATCTATCATCAGgtagggattt ... gtggttccagGCTCGAAGTGCCCCTACCGACAGTCTCCGGCCGATGTTTCTCATCATAAAT
EST: gi|162260165|gb|FC436300.1|FC436300
EST:     TCACGACATATACTCTTCTAGTGTTGTTCTGGGCCGAAATCTATCATCAG                         GCTCGAAGTGCCCCTACCGACAGTCTCCGGCCGATGTTTCTCATCATAAAT
genomic: TCACGACATATACTCTTCTAGTGTTGTTCTGGGCCGAAATCTATCATCAGgtagggattt ... gtggttccagGCTCGAAGTGCCCCTACCGACAGTCTCCGGCCGATGTTTCTCATCATAAAT
EST: gi|208363026|gb|DC946909.1|DC946909
EST:     GGCCGAANT-TATCATCAG                         GCTCGAAGTGCCCCTACCGACAGTCTCCGGCCGATGTTTCTCATCATAAAT
genomic: GGCCGAAATCTATCATCAGgtagggattt ... gtggttccagGCTCGAAGTGCCCCTACCGACAGTCTCCGGCCGATGTTTCTCATCATAAAT
EST: gi|208385598|gb|DC937143.1|DC937143
EST:     TCACGACATATACTCTTCTAGTGTTGTTCTGGGCCGAAATCTATCATCAG                         GCTCGAAGTGCCCCTACCGACAGTCTCCGGCCGATGTTTCTCATCATAAAT
genomic: TCACGACATATACTCTTCTAGTGTTGTTCTGGGCCGAAATCTATCATCAGgtagggattt ... gtggttccagGCTCGAAGTGCCCCTACCGACAGTCTCCGGCCGATGTTTCTCATCATAAAT
EST: gi|208367886|gb|DC950953.1|DC950953
EST:     TCACGACATATACTCTTCTAGTGTTGTTCTGGGCCGAAATCTATCATCAG                         GCTCGAAGTGCCCCTACCGACAGTCTCCGGCCGATGTTTCTCATCATAAAT
genomic: TCACGACATATACTCTTCTAGTGTTGTTCTGGGCCGAAATCTATCATCAGgtagggattt ... gtggttccagGCTCGAAGTGCCCCTACCGACAGTCTCCGGCCGATGTTTCTCATCATAAAT
EST: gi|162278111|gb|FC453930.1|FC453930
EST:     TCACGACATATACTCTTCTAGTGTTGTTCTGGGCCGAAATCTATCATCAG                         GCTCGAAGTGCCCCTACCGACAGTCTCCGGCCGATGTTTCTCATCATAAAT
genomic: TCACGACATATACTCTTCTAGTGTTGTTCTGGGCCGAAATCTATCATCAGgtagggattt ... gtggttccagGCTCGAAGTGCCCCTACCGACAGTCTCCGGCCGATGTTTCTCATCATAAAT
EST: gi|208377957|gb|DC910961.1|DC910961
EST:     TCACGACATATACTCTTCTAGTGTTGTTCTGGGCCGAAATCTATCATCAG                         GCTCGAAGTGCCCCTACCGACAGTCTCCGGCCGATGTTTCTCATCATAAAT
genomic: TCACGACATATACTCTTCTAGTGTTGTTCTGGGCCGAAATCTATCATCAGgtagggattt ... gtggttccagGCTCGAAGTGCCCCTACCGACAGTCTCCGGCCGATGTTTCTCATCATAAAT
EST: gi|208375008|gb|DC956404.1|DC956404
EST:     NCACGACATATACTCTTCTAGTGTTGTTCTGGGCCGAAATCTATCATCAG                         GCTCGAAGTGCCCCTACCGACAGTCTCCGGCCGATGTTTCTCATCATAAAT
genomic: -CACGACATATACTCTTCTAGTGTTGTTCTGGGCCGAAATCTATCATCAGgtagggattt ... gtggttccagGCTCGAAGTGCCCCTACCGACAGTCTCCGGCCGATGTTTCTCATCATAAAT
EST: gi|208374777|gb|DC932046.1|DC932046
EST:     TCACGACATATACTCTTCTAGTGTTGTTCTGGGCCGAAATCTATCATCAG                         GCTCGAAGTGCCCCTACCGACAGTCTCCGGCCGATGTTTCTCATCATAAAT
genomic: TCACGACATATACTCTTCTAGTGTTGTTCTGGGCCGAAATCTATCATCAGgtagggattt ... gtggttccagGCTCGAAGTGCCCCTACCGACAGTCTCCGGCCGATGTTTCTCATCATAAAT
EST: gi|162278110|gb|FC453929.1|FC453929
EST:     TCACGACATATACTCTTCTAGTGTTGTTCTGGGCCGAAATCTATCATCAG                         GCTCGAAGTGCCCCTACCGACAGTCTCCGGCCGATGTTTCTCATCATAAAT
genomic: TCACGACATATACTCTTCTAGTGTTGTTCTGGGCCGAAATCTATCATCAGgtagggattt ... gtggttccagGCTCGAAGTGCCCCTACCGACAGTCTCCGGCCGATGTTTCTCATCATAAAT
EST: gi|208349948|gb|DC913656.1|DC913656
EST:     TCACGACATATACTCTTCTAGTGTTGTTCTGGGCCNAAATCTATCATCAG                         GCTCGAAGTGCCCCTACCGACAGTCTCCGGCCGATGTTTCTCATCATAAAT
genomic: TCACGACATATACTCTTCTAGTGTTGTTCTGGGCCGAAATCTATCATCAGgtagggattt ... gtggttccagGCTCGAAGTGCCCCTACCGACAGTCTCCGGCCGATGTTTCTCATCATAAAT
EST: gi|208390738|gb|DC937894.1|DC937894
EST:     TCACGACATATACTCTTCTAGTGTTGTTCTGGGCCGAAATCTATCATCAG                         GCTCGAAGTGCCCCTACCGACAGTCTCCGGCCGATGTTTCTCATCATAAAT
genomic: TCACGACATATACTCTTCTAGTGTTGTTCTGGGCCGAAATCTATCATCAGgtagggattt ... gtggttccagGCTCGAAGTGCCCCTACCGACAGTCTCCGGCCGATGTTTCTCATCATAAAT
EST: gi|100364489|gb|BY984629.1|BY984629
EST:     TCACGACATATACTCTTCTAGTGTTGTTCTGGGCCGAAATCTATCATCAG                         GCTCGAAGTGCCCCTACCGACAGTCTCCGGCCGATGTTTCTCATCATAAAT
genomic: TCACGACATATACTCTTCTAGTGTTGTTCTGGGCCGAAATCTATCATCAGgtagggattt ... gtggttccagGCTCGAAGTGCCCCTACCGACAGTCTCCGGCCGATGTTTCTCATCATAAAT
EST: gi|162260166|gb|FC436301.1|FC436301
EST:     TCACGACATATACTCTTCTAGTGTTGTTCTGGGCCGAAATCTATCATCAG                         GCTCGAAGTGCCCCTACCGACAGTCTCCGGCCGATGTTTCTCATCATAAAT
genomic: TCACGACATATACTCTTCTAGTGTTGTTCTGGGCCGAAATCTATCATCAGgtagggattt ... gtggttccagGCTCGAAGTGCCCCTACCGACAGTCTCCGGCCGATGTTTCTCATCATAAAT
EST: gi|18361916|gb|BJ193983.1|BJ193983
EST:     TCACGACATATACTCTTCTAGTGTTGTTCTGGGCCGAAATCTATCATCAG                         GCTTCGAAGTGCCCCTACCGACAGTCTCCGGCCCGATGTTTCTCATCATAA
genomic: TCACGACATATACTCTTCTAGTGTTGTTCTGGGCCGAAATCTATCATCAGgtagggattt ... gtggttccagGCT-CGAAGTGCCCCTACCGACAGTCTCCGGCC-GATGTTTCTCATCATAA
EST: gi|208386340|gb|DC932836.1|DC932836
EST:     TCACGACATATACTCTTCTAGTGTTGTTCTGGGCCGAAATCTATCATCAG                         GCTCGAAGTGCCCCTACCGACAGTCTCCGGCCGATGTTTCTCATCATAAAT
genomic: TCACGACATATACTCTTCTAGTGTTGTTCTGGGCCGAAATCTATCATCAGgtagggattt ... gtggttccagGCTCGAAGTGCCCCTACCGACAGTCTCCGGCCGATGTTTCTCATCATAAAT
EST: gi|208387111|gb|DC941283.1|DC941283
EST:     TCACGACATATACTCTTCTAGTGTTGTTCTGGGCCGAAATCTATCATCAG                         GCTCGAAGTGCCCCTACCGACAGTCTCCGGCCGATGTTTCCCATCATAAAT
genomic: TCACGACATATACTCTTCTAGTGTTGTTCTGGGCCGAAATCTATCATCAGgtagggattt ... gtggttccagGCTCGAAGTGCCCCTACCGACAGTCTCCGGCCGATGTTTCTCATCATAAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cccatgtaacagataacatgtgagattgattatgcggtttcgtttgtggttccagGCTCGAAGTGCCCCTACCGACAGTCTCCGGCCGATGTTTCTCATCATAAATGCCGCAATCTATTTCACTCAG
                        attgattat  TA-rich tract