1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtacgaatcttctcagatcacacctttggttgaagaatgcgtgtgatttagtttttgtcaaagaggattcgatgctcaacacatggaattctggttgaaagatgtttcgaattagagttaggccttgattggtgattcttctcacctgagtaacaggttctcattctgtaactggtataactgcagGAAAAGAGTACGAGACAAGAAATTTCAGCTTCGAGGATGTCAATCATGGAATCTCAAATCGTATATCTAAG
species | Physcomitrella patens |
transcript | PP1S28_171V6.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CTCCATTAAGCCAGTTATTGCCAACTCCAATGTTATTGTGAATTGCATCG GAAAAGAGTACGAGACAAGAAATTTCAGCTTCGAGGATGTCAATCATGGAAEST: gi|100448516|gb|CJ972815.1|CJ972815
genomic: CTCCATTAAGCCAGTTATTGCCAACTCCAATGTTATTGTGAATTGCATCGgtacgaatct ... ataactgcagGAAAAGAGTACGAGACAAGAAATTTCAGCTTCGAGGATGTCAATCATGGAA
EST: CTCCATTAAGCCAGTTATTGCCAACTCCAATGTTATTGTGAATTGCATCG GAAAAGAGTACGAGACAAGAAATTTCAGCTTCGAGGATGTCAATCATGGAAEST: gi|208359598|gb|DC943168.1|DC943168
genomic: CTCCATTAAGCCAGTTATTGCCAACTCCAATGTTATTGTGAATTGCATCGgtacgaatct ... ataactgcagGAAAAGAGTACGAGACAAGAAATTTCAGCTTCGAGGATGTCAATCATGGAA
EST: CTCCATTAAGCTAGTTATTGCCAACTCCAATGTTATTGTGAATTGCATCG GAAAAGAGTACGAGACAAGAAATTTCAGCTTCGAGGATGTCAATCATGGAAEST: gi|162236665|gb|FC413760.1|FC413760
genomic: CTCCATTAAGCCAGTTATTGCCAACTCCAATGTTATTGTGAATTGCATCGgtacgaatct ... ataactgcagGAAAAGAGTACGAGACAAGAAATTTCAGCTTCGAGGATGTCAATCATGGAA
EST: CTCCATTAAGGCAGTTATTGCCAACTCCAATGTTATTGTGAATTGCATCG GAAAAGAGTACGAGACAAGAAATTTCAGCTTCGAGGATGTCAATCATGGAA
genomic: CTCCATTAAGCCAGTTATTGCCAACTCCAATGTTATTGTGAATTGCATCGgtacgaatct ... ataactgcagGAAAAGAGTACGAGACAAGAAATTTCAGCTTCGAGGATGTCAATCATGGAA
gtgattcttctcacctgagtaacaggttctcattctgtaactggtataactgcagGAAAAGAGTACGAGACAAGAAATTTCAGCTTCGAGGATGTCAATCATGGAATCTCAAATCGTATATCTAAG
tataact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgaatcttctcagatcacacctttggttgaagaatgcgtgtgatttagtttttgtcaaagaggattcgatgctcaacacatggaattctggttgaaagatgtttcgaattagagttaggccttgattggtgattcttctcacctgagtaacaggttctcattctgtaactggtataactgcagGAAAAGAGTACGAGACAAGAAATTTCAGCTTCGAGGATGTCAATCATGGAATCTCAAATCGTATATCTAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA