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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgcaagtttttatgcttgtccggaccaattactggttgcgattattctgcgtgcgggtaactatttacacttttactatcgcttgcgctggtgtccgaatgatgggatgagatatgcagTACGACTCTTTCGACCTTGGGATCATAACAACCGATGAGTTCACAAATGCTGAAATTTTGGATGTCACTTACCCAACCGTGCGAGAGCGTCTTTTTAACG

Basic information

species Physcomitrella patens
transcript PP1S286_35V6.2
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S286_35V6.1 (Physcomitrella patens), 3'ss of exon 4
lower sequence: GLYMA19G27500.1 (Glycine max), 3'ss of exon 4
gtacgcaagtttttat-gcttgtccgga-ccaattactggttgcgattattc-tgcgtgcgggtaactatttac--acttttactatcgcttgc----gctggtgtccgaatgatggg-atgagatatgcagTACGACTCTTTCGACCTTGGGATCATAACAACCGATGAGTTCACAAATGCTGAAATTTTGGATGTCACTTACCCAACCGTGCGAGAGCGTCTTTTTAACG
    | | |||||  | || | ||   | |  |||||   |    |   ||| |    || | | |  |||  |  ||| | | | ||| |       | | || ||  |||  |     |  | |  |||||| ||  | || ||  | || || |||||||| ||||| |||||||||||||| |||||||| |  || || ||  | ||   | || |  |   ||  |
----gtatgttttggttgcctatctaaaacttattacaaataaaaaagtttcgtaatggctgattaggattgtccaactctgaatctcgatcaatatagtttgtttctaaattttatttgtttgtttggcagTATGATGCATTTGAGATGGGTATTATAACAACTGATGACTTCACAAATGCTGACATTTTGGAAGCAACATATCCTGCTGTTGCAAAGAGGTTACATAGTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttacacttttactatcgcttgcgctggtgtccgaatgatgggatgagatatgcagTACGACTCTTTCGACCTTGGGATCATAACAACCGATGAGTTCACAAATGCTGAAATTTTGGATGTCACTTACCCAACCGTGCGAGAGCGTCTTTTTAACG
      ttttactat  TA-rich tract