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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagcctaccacatgtgttccctgcgtttttctttggaacagggtttgcataggctccctataagtatccctatcctttaagcattttgcatgtctccagttgcttcaggggaagggcatgatgtgatactaaagcagatttacctcttcgtccagATATGTTTTGGTGGCGGTAAAAGGCCCCGACGGAAGCGAGCATGGAAGACTACGAATAGGAAAGGTTCGTTTGCTAAAGCTCGAAAGCTCGTGGATCTCA

Basic information

species Physcomitrella patens
transcript PP1S286_16V6.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67571874|gb|BJ944698.1|BJ944698
EST:     TTGGGGCATTGCAAATCGGAGTGATCGGCTGTCGAAGATCAGCTTCCTGG                         ATATGTTTTGGTGGCGGTAAAAGGCCCCGACGGAAGCGAGCATGGAAGACT
genomic: TTGGGGCATTGCAAATCGGAGTGATCGGCTGTCGAAGATCAGCTTCCTGGgttagcctac ... cttcgtccagATATGTTTTGGTGGCGGTAAAAGGCCCCGACGGAAGCGAGCATGGAAGACT
EST: gi|162240034|gb|FC418811.1|FC418811
EST:     TTGGGGCATTGCAAATCGGAGTGATCGGCTGTCGAAGATCAGCTTCCTGG                         ATATGTTTTGGTGGCGGTAAAAGGCCCCGACGGAAGCGAGCATGGAAGACT
genomic: TTGGGGCATTGCAAATCGGAGTGATCGGCTGTCGAAGATCAGCTTCCTGGgttagcctac ... cttcgtccagATATGTTTTGGTGGCGGTAAAAGGCCCCGACGGAAGCGAGCATGGAAGACT
EST: gi|100438348|gb|BY979912.1|BY979912
EST:     TTGGGGCATTGCAAATCGGAGTGATCGGCTGTCGAAGATCAGCTTCCTGG                         ATATGTTTTGGTGGCGGTAAAAGGGCCCGACGGAAGCGAGCATGG
genomic: TTGGGGCATTGCAAATCGGAGTGATCGGCTGTCGAAGATCAGCTTCCTGGgttagcctac ... cttcgtccagATATGTTTTGGTGGCGGTAAAAGGCCCCGACGGAAGCGAGCATGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcttcaggggaagggcatgatgtgatactaaagcagatttacctcttcgtccagATATGTTTTGGTGGCGGTAAAAGGCCCCGACGGAAGCGAGCATGGAAGACTACGAATAGGAAAGGTTCGTTTGCTAAAGCTCGAAAGCTCGTGGATCTCA
                          tactaaa  putative branch site (score: 1)
                                      tttacctcttcgtcc  putative PPT
                         atactaaa  TA-rich tract