Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtgtttgttcctctagttttcttgtattttgtgaaaattgaagtctaagttattgtaatggttgtaaacgaactgagtatcttggttgacatgcttgcagGACAAGAGAAACCCGTTTGGCGTGCCAATGTTAGAGCGAACTCCTGCTAAATTCAACTGGCCCAAGTTCTCCTTCGAAGAGGAGAAAAAGGCTTCCTTTT

Basic information

species Physcomitrella patens
transcript PP1S285_10V6.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162255173|gb|FC431483.1|FC431483
EST:     GCCCCTCGGACTTCCCGGTTTGCAACCTGCGAGCCGGACAGTGTCTCAAG                         GACAAGAGAAACCCGTTTGGCGTGCCAATGTTAGAGCGAACTCCTGCTAAA
genomic: GCCCCTCGGACTTCCCGGTTTGCAACCTGCGAGCCGGACAGTGTCTCAAGgtaacttgct ... atgcttgcagGACAAGAGAAACCCGTTTGGCGTGCCAATGTTAGAGCGAACTCCTGCTAAA
EST: gi|37836327|gb|BJ594335.1|BJ594335
EST:     GCCCCTCGGACTTCCCGGTTTGCAACCTGCGAGCCGGACAGTGTCTCAAG                         GACAAGAGAAACCCGTTTGGCGTGCCAATGTTAGAGCGAACTCCTGCTAAA
genomic: GCCCCTCGGACTTCCCGGTTTGCAACCTGCGAGCCGGACAGTGTCTCAAGgtaacttgct ... atgcttgcagGACAAGAGAAACCCGTTTGGCGTGCCAATGTTAGAGCGAACTCCTGCTAAA
EST: gi|67727704|gb|BJ977963.1|BJ977963
EST:     GCCCCTCGGACTTCCCGGTTTGCAACCTGCGAGCCGGACAGTGTCTCAAG                         GACAAGAGAAACCCGTTTGGCGTGCCAATGTTAGAGCGAACTCCTGCTAAA
genomic: GCCCCTCGGACTTCCCGGTTTGCAACCTGCGAGCCGGACAGTGTCTCAAGgtaacttgct ... atgcttgcagGACAAGAGAAACCCGTTTGGCGTGCCAATGTTAGAGCGAACTCCTGCTAAA
EST: gi|37833215|gb|BJ591227.1|BJ591227
EST:     GCCCCTCGGACTTCCCGGTTTGCAACCTGCGAGCCGGACAGTGTCTCAAG                         GACAAGAGAAACCCGTTTGGCGTGCCAATGTTAGAGCGAACTCCTGCTAAA
genomic: GCCCCTCGGACTTCCCGGTTTGCAACCTGCGAGCCGGACAGTGTCTCAAGgtaacttgct ... atgcttgcagGACAAGAGAAACCCGTTTGGCGTGCCAATGTTAGAGCGAACTCCTGCTAAA
EST: gi|162172913|gb|FC348918.1|FC348918
EST:     GCCCCTCGGACTTCCCGGTTTGCAACCTGCGAGCCGGACAGTGTCTCAAG                         GACAAGAGAAACCCGTTTGGCGTGCCAATGTTAGAGCGAACTCCTGCTAAA
genomic: GCCCCTCGGACTTCCCGGTTTGCAACCTGCGAGCCGGACAGTGTCTCAAGgtaacttgct ... atgcttgcagGACAAGAGAAACCCGTTTGGCGTGCCAATGTTAGAGCGAACTCCTGCTAAA
EST: gi|37850717|gb|BJ608725.1|BJ608725
EST:     GCCCCTCGGACTTCCCGGTTTGCAACCTGCGAGCCGGACAGTGTCTCAAG                         GACAAGAGAAACCCGTTTGGCGTGCCAATGTTAGAGCGAACTCCTGTTAAA
genomic: GCCCCTCGGACTTCCCGGTTTGCAACCTGCGAGCCGGACAGTGTCTCAAGgtaacttgct ... atgcttgcagGACAAGAGAAACCCGTTTGGCGTGCCAATGTTAGAGCGAACTCCTGCTAAA
EST: gi|162199325|gb|FC373705.1|FC373705
EST:     GCCCCTCGGACTTCCCGGTTTGCAACCTGCGAGCCGGACAGTGTCTCAAG                         GACAAGAGAAACCCGTTTGGCGTGCCAATGTTAGAGCGAACTCCTGCTAAA
genomic: GCCCCTCGGACTTCCCGGTTTGCAACCTGCGAGCCGGACAGTGTCTCAAGgtaacttgct ... atgcttgcagGACAAGAGAAACCCGTTTGGCGTGCCAATGTTAGAGCGAACTCCTGCTAAA
EST: gi|67579011|gb|BJ951162.1|BJ951162
EST:     GCCCCTCGGACTTCCCGGTTTGCAACCTGCGAGCCGGACAGTGTCTCAAG                         GACAAGAGAAACCCGTTTGGCGTGCCAATGTTAGAGCGAACTCCTGCTAAA
genomic: GCCCCTCGGACTTCCCGGTTTGCAACCTGCGAGCCGGACAGTGTCTCAAGgtaacttgct ... atgcttgcagGACAAGAGAAACCCGTTTGGCGTGCCAATGTTAGAGCGAACTCCTGCTAAA
EST: gi|162261944|gb|FC437842.1|FC437842
EST:     GCCCCTCGGACTTCCCGGTTTGCAACCTGCGAGCCGGACAGTGTTTCAAG                         GACAAGAGAAACCCGTTTGGCGTGCCAATGTTAGAGCGAACTCCTGCTAAA
genomic: GCCCCTCGGACTTCCCGGTTTGCAACCTGCGAGCCGGACAGTGTCTCAAGgtaacttgct ... atgcttgcagGACAAGAGAAACCCGTTTGGCGTGCCAATGTTAGAGCGAACTCCTGCTAAA
EST: gi|162182086|gb|FC358517.1|FC358517
EST:     GCCCCTCGGACTTCCCGGTTTGCAACCTGCGAGCCGGACAGTGTCTCAAG                         GACAAGAGAAACCCGTTTGGCGTGCCAATGTTAGAGCGAACTCCTGCTAAA
genomic: GCCCCTCGGACTTCCCGGTTTGCAACCTGCGAGCCGGACAGTGTCTCAAGgtaacttgct ... atgcttgcagGACAAGAGAAACCCGTTTGGCGTGCCAATGTTAGAGCGAACTCCTGCTAAA
EST: gi|162234970|gb|FC411757.1|FC411757
EST:     GCCCCTCGGACTTCCCGGTTTGCAACCTGCGAGCCGGACAGTGTCTCAAG                         GACAAGAGAAACCCGTTTGGCGTGCCAATGTTAGAGCGAACTCCTGCTAAA
genomic: GCCCCTCGGACTTCCCGGTTTGCAACCTGCGAGCCGGACAGTGTCTCAAGgtaacttgct ... atgcttgcagGACAAGAGAAACCCGTTTGGCGTGCCAATGTTAGAGCGAACTCCTGCTAAA
EST: gi|37826222|gb|BJ584234.1|BJ584234
EST:     GCCCCTCGGACTTCCCGGTTTGCAACCTGCGAGCCGGACAGTGTCTCAAG                         GACAAGAGAAACCCGTTTGGCGTGCCAATGTTAGAGCGAACTCCTGCTAAA
genomic: GCCCCTCGGACTTCCCGGTTTGCAACCTGCGAGCCGGACAGTGTCTCAAGgtaacttgct ... atgcttgcagGACAAGAGAAACCCGTTTGGCGTGCCAATGTTAGAGCGAACTCCTGCTAAA
EST: gi|18334163|gb|BJ166179.1|BJ166179
EST:     GCCCCTCGGACTTCCCGGTTTGCAACCTGCGAGCCGGACAGTGTCTCAAG                         GACAAGAGAAACCCGTTTGGCGTGCCAATGTTAGAGCGAACTCCTGCTAAA
genomic: GCCCCTCGGACTTCCCGGTTTGCAACCTGCGAGCCGGACAGTGTCTCAAGgtaacttgct ... atgcttgcagGACAAGAGAAACCCGTTTGGCGTGCCAATGTTAGAGCGAACTCCTGCTAAA
EST: gi|37822785|gb|BJ580851.1|BJ580851
EST:     CTGCGAGCCGGACAGTGTCTCAAG                         GACAAGAGAAACCCGTTTGGCGTGCCAATGTTAGAGCGAACTCCTGCTAAA
genomic: CTGCGAGCCGGACAGTGTCTCAAGgtaacttgct ... atgcttgcagGACAAGAGAAACCCGTTTGGCGTGCCAATGTTAGAGCGAACTCCTGCTAAA
EST: gi|37849636|gb|BJ607644.1|BJ607644
EST:     GCCCCTCGGACTTCCCGGTTTGCAACCTGCGAGCCGGACAGTGTCTCAAG                         GACAAGAGAAACCCGTTTGGCGTGCCAATGTTAGAGCGAACTCCTGCTAAA
genomic: GCCCCTCGGACTTCCCGGTTTGCAACCTGCGAGCCGGACAGTGTCTCAAGgtaacttgct ... atgcttgcagGACAAGAGAAACCCGTTTGGCGTGCCAATGTTAGAGCGAACTCCTGCTAAA
EST: gi|37843937|gb|BJ601945.1|BJ601945
EST:     GCCCCTCGGACTTCCCGGTTTGCAACCTGCGAGCCGGACAGTGTCTCAAG                         GACAAGAGAAACCCGTTTGGCGTGCCAATGTTAGAGCGAACTCCTGCTAAA
genomic: GCCCCTCGGACTTCCCGGTTTGCAACCTGCGAGCCGGACAGTGTCTCAAGgtaacttgct ... atgcttgcagGACAAGAGAAACCCGTTTGGCGTGCCAATGTTAGAGCGAACTCCTGCTAAA
EST: gi|162243353|gb|FC417054.1|FC417054
EST:     GCCCCTCGGACTTCCCGGTTTGCAACCTGCGAGCCGGACAGTGTCTCAAG                         GACAAGAGAAACCCGTTTGGCGTGCCAATGTTAGAGCGAACTCCTGCTAAA
genomic: GCCCCTCGGACTTCCCGGTTTGCAACCTGCGAGCCGGACAGTGTCTCAAGgtaacttgct ... atgcttgcagGACAAGAGAAACCCGTTTGGCGTGCCAATGTTAGAGCGAACTCCTGCTAAA
EST: gi|162244557|gb|FC425408.1|FC425408
EST:     GCCCCTCGGACTTCCCGGTTTGCAACCTGCGAGCCGGACAGTGTCTCAAG                         GACAAGAGAAACCCGTTTGGCGTGCCAATGTTAGAGCGAACTCCTGCTAAA
genomic: GCCCCTCGGACTTCCCGGTTTGCAACCTGCGAGCCGGACAGTGTCTCAAGgtaacttgct ... atgcttgcagGACAAGAGAAACCCGTTTGGCGTGCCAATGTTAGAGCGAACTCCTGCTAAA
EST: gi|18337901|gb|BJ169925.1|BJ169925
EST:     GCCCCTCGGACTTCCCGGTTTGCAACCTGCGAGCCGGACAGTGTCTCAAG                         GACAAGAGAAACCCGTTTGGCGTGCCAATGTTAGAGCGAACTCCTGCTAAA
genomic: GCCCCTCGGACTTCCCGGTTTGCAACCTGCGAGCCGGACAGTGTCTCAAGgtaacttgct ... atgcttgcagGACAAGAGAAACCCGTTTGGCGTGCCAATGTTAGAGCGAACTCCTGCTAAA
EST: gi|208353405|gb|DC946311.1|DC946311
EST:     GCCCCTCGGACTTCCCGGTTTGCAACCTGCGAGCCGGACAGTGTCTCAAG                         GACAAGAGAAACCCGTTTGGCGTGCCAATGTTAGAGCGAACTCCTGCTAAA
genomic: GCCCCTCGGACTTCCCGGTTTGCAACCTGCGAGCCGGACAGTGTCTCAAGgtaacttgct ... atgcttgcagGACAAGAGAAACCCGTTTGGCGTGCCAATGTTAGAGCGAACTCCTGCTAAA
EST: gi|162161645|gb|FC339060.1|FC339060
EST:     GCCCCTCGGACTTCCCGGTTTGCAACCTGCGAGCCGGACAGTGTCTCAAG                         GACAAGAGAAACCCGTTTGGCGTGCCAATGTTAGAGCGAACTCCTGCTAAA
genomic: GCCCCTCGGACTTCCCGGTTTGCAACCTGCGAGCCGGACAGTGTCTCAAGgtaacttgct ... atgcttgcagGACAAGAGAAACCCGTTTGGCGTGCCAATGTTAGAGCGAACTCCTGCTAAA
EST: gi|37828431|gb|BJ586443.1|BJ586443
EST:     GCCCCTCGGACTTCCCGGTTTGCAACCTGCGAGCCGGACAGTGTCTCAAG                         GACAAGAGAAACCCGTTTGGCGTGCCAATGTTAGAGCGAACTCCTGCTAAA
genomic: GCCCCTCGGACTTCCCGGTTTGCAACCTGCGAGCCGGACAGTGTCTCAAGgtaacttgct ... atgcttgcagGACAAGAGAAACCCGTTTGGCGTGCCAATGTTAGAGCGAACTCCTGCTAAA
EST: gi|67693136|gb|BJ953369.1|BJ953369
EST:     GCCCCTCGGACTTCCCGGTTTGCAACCTGCGAGCCGGACAGTGTCTCAAG                         GACAAGAGAAACCCGTTTGGCGTGCCAATGTTAGAGCGAACTCCTGCTAAA
genomic: GCCCCTCGGACTTCCCGGTTTGCAACCTGCGAGCCGGACAGTGTCTCAAGgtaacttgct ... atgcttgcagGACAAGAGAAACCCGTTTGGCGTGCCAATGTTAGAGCGAACTCCTGCTAAA
EST: gi|18334172|gb|BJ166188.1|BJ166188
EST:     CAGTGTCTCAAG                         GACAAGAGAAACCCGTTTGGCGTGCCAATGTTAGAGCGAACTCCTGCTAAA
genomic: CAGTGTCTCAAGgtaacttgct ... atgcttgcagGACAAGAGAAACCCGTTTGGCGTGCCAATGTTAGAGCGAACTCCTGCTAAA
EST: gi|37834914|gb|BJ592926.1|BJ592926
EST:     GCCCCTCGGACTTCCCGGTTTGCAACCTGCGAGCCGGACAGTGTCTCAAG                         GACAAGAGAAACCCGTTTGGCGTGCCAATGTTAGAGCGAACTCCTGCTAAA
genomic: GCCCCTCGGACTTCCCGGTTTGCAACCTGCGAGCCGGACAGTGTCTCAAGgtaacttgct ... atgcttgcagGACAAGAGAAACCCGTTTGGCGTGCCAATGTTAGAGCGAACTCCTGCTAAA
EST: gi|37820937|gb|BJ579003.1|BJ579003
EST:     GCCCCTCGGACTTCCCGGTTTGCAACCTGCGAGCCGGACAGTGTCTCAAG                         GACAAGAGAAACCCGTTTGGCGTGCCAATGTTAGAGCGAACTCCTGCTAAA
genomic: GCCCCTCGGACTTCCCGGTTTGCAACCTGCGAGCCGGACAGTGTCTCAAGgtaacttgct ... atgcttgcagGACAAGAGAAACCCGTTTGGCGTGCCAATGTTAGAGCGAACTCCTGCTAAA
EST: gi|162177961|gb|FC354067.1|FC354067
EST:     GCCCCTCGGACTTCCCGGTTTGCAACCTGCGAGCCGGACAGTGTCTCAAG                         GACAAGAGAAACCCGTTTGGCGTGCCAATGTTAGAGCGAACTCCTGCTAAA
genomic: GCCCCTCGGACTTCCCGGTTTGCAACCTGCGAGCCGGACAGTGTCTCAAGgtaacttgct ... atgcttgcagGACAAGAGAAACCCGTTTGGCGTGCCAATGTTAGAGCGAACTCCTGCTAAA
EST: gi|162189820|gb|FC365549.1|FC365549
EST:     GCCCCTCGGACTTCCCGGTTTGCAACCTGCGAGCCGGACAGTGTCTCAAG                         GACAAGAGAAACCCGTTTGGCGTGCCAATGTTAGAGCGAACTCCTGCTAAA
genomic: GCCCCTCGGACTTCCCGGTTTGCAACCTGCGAGCCGGACAGTGTCTCAAGgtaacttgct ... atgcttgcagGACAAGAGAAACCCGTTTGGCGTGCCAATGTTAGAGCGAACTCCTGCTAAA
EST: gi|18337283|gb|BJ169307.1|BJ169307
EST:     CCTGCGAGCCGGACAGTGTCTCAAG                         GACAAGAGAAACCCGTTTGGCGTGCCAATGTTAGAGCGAACTCCTGCTAAA
genomic: CCTGCGAGCCGGACAGTGTCTCAAGgtaacttgct ... atgcttgcagGACAAGAGAAACCCGTTTGGCGTGCCAATGTTAGAGCGAACTCCTGCTAAA
EST: gi|162180585|gb|FC356942.1|FC356942
EST:     GCCCCTCGGACTTCCCGGTTTGCAACCTGCGAGCCGGACAGTGTCTCAAG                         GACAAGAGAAACCCGTTTGGCGTGCCAATGTTAGAGCGAACTCCTGCTAAA
genomic: GCCCCTCGGACTTCCCGGTTTGCAACCTGCGAGCCGGACAGTGTCTCAAGgtaacttgct ... atgcttgcagGACAAGAGAAACCCGTTTGGCGTGCCAATGTTAGAGCGAACTCCTGCTAAA
EST: gi|37836332|gb|BJ594340.1|BJ594340
EST:     GCCCCTCGGACTTCCCGGTTTGCAACCTGCGAGCCGGACAGTGTCTCAAG                         GACAAGAGAAACCCGTTTGGCGTGCCAATGTTAGAGCGAACTCCTGCTAAA
genomic: GCCCCTCGGACTTCCCGGTTTGCAACCTGCGAGCCGGACAGTGTCTCAAGgtaacttgct ... atgcttgcagGACAAGAGAAACCCGTTTGGCGTGCCAATGTTAGAGCGAACTCCTGCTAAA
EST: gi|37844724|gb|BJ602732.1|BJ602732
EST:     GCCCCTCGGACTTCCCGNTTTGCAACCTGCGAGCCGGNCAGTGTCTCAAG                         GACAAGAGAAACCCGTTTGGCGTGCCAATGNTAGAGCGAACTCNTGCTAAA
genomic: GCCCCTCGGACTTCCCGGTTTGCAACCTGCGAGCCGGACAGTGTCTCAAGgtaacttgct ... atgcttgcagGACAAGAGAAACCCGTTTGGCGTGCCAATGTTAGAGCGAACTCCTGCTAAA
EST: gi|37851274|gb|BJ609282.1|BJ609282
EST:     GCCCCTCGGACTTCCCGGTTTGCAACCTGCGAGCCGGACAGTGTCTCAAG                         GACAAGAGAAACCCGTTTGGCGTGCCAATGTTAGAGCGAACTCCTGCTAAA
genomic: GCCCCTCGGACTTCCCGGTTTGCAACCTGCGAGCCGGACAGTGTCTCAAGgtaacttgct ... atgcttgcagGACAAGAGAAACCCGTTTGGCGTGCCAATGTTAGAGCGAACTCCTGCTAAA
EST: gi|67697129|gb|BJ957362.1|BJ957362
EST:     GCCCCTCGGACTTCCCGGTTTGCAACCTGCGAGCCGGACAGTGTCTCAAG                         GACAAGAGAAACCCGTTTGGCGTGCCAATGTTAGAGCGAACTCCTGCTAAA
genomic: GCCCCTCGGACTTCCCGGTTTGCAACCTGCGAGCCGGACAGTGTCTCAAGgtaacttgct ... atgcttgcagGACAAGAGAAACCCGTTTGGCGTGCCAATGTTAGAGCGAACTCCTGCTAAA
EST: gi|162185296|gb|FC360870.1|FC360870
EST:     GCCCCTCGGACTTCCCGGTTTGCAACCTGCGAGCCGGACAGTGTCTCAAG                         GACAAGAGAAACCCGTTTGGCGTGCCAATGTTAGAGCGAACTCCTGCTAAA
genomic: GCCCCTCGGACTTCCCGGTTTGCAACCTGCGAGCCGGACAGTGTCTCAAGgtaacttgct ... atgcttgcagGACAAGAGAAACCCGTTTGGCGTGCCAATGTTAGAGCGAACTCCTGCTAAA
EST: gi|37846591|gb|BJ604599.1|BJ604599
EST:     GCCCCTCGGACTTCCCGGTTTGCAACCTGCGAGCCGGACAGTGTCTCAAG                         GACAAGAGAAACCCGTTTGGCGTGCCAATGTTAGAGCGAACTCCTGCTAAA
genomic: GCCCCTCGGACTTCCCGGTTTGCAACCTGCGAGCCGGACAGTGTCTCAAGgtaacttgct ... atgcttgcagGACAAGAGAAACCCGTTTGGCGTGCCAATGTTAGAGCGAACTCCTGCTAAA
EST: gi|162163720|gb|FC340306.1|FC340306
EST:     GCCCCTCGGACTTCCCGGTTTGCAACCTGCGAGCCGGACAGTGTCTCAAG                         GACAAGAGAAACCCGTTTGGCGTGCCAATGTTAGAGCGAACTCCTGCTAAA
genomic: GCCCCTCGGACTTCCCGGTTTGCAACCTGCGAGCCGGACAGTGTCTCAAGgtaacttgct ... atgcttgcagGACAAGAGAAACCCGTTTGGCGTGCCAATGTTAGAGCGAACTCCTGCTAAA
EST: gi|37848643|gb|BJ606651.1|BJ606651
EST:     GCCCCTCGGACTTCCCGGTTTGCAACCTGCGAGCCGGACAGTGTCTCAAG                         GACAAGAGAAACCCGTTTGGCGTGCCAATGTTAGAGCGAACTCCTGCTAAA
genomic: GCCCCTCGGACTTCCCGGTTTGCAACCTGCGAGCCGGACAGTGTCTCAAGgtaacttgct ... atgcttgcagGACAAGAGAAACCCGTTTGGCGTGCCAATGTTAGAGCGAACTCCTGCTAAA
EST: gi|37835075|gb|BJ593087.1|BJ593087
EST:     GCCCCTCGGACTTCCCGGTTTGCAACCTGCGAGCCGGACAGTGTCTCAAG                         GACAAGAGAAACCCGTTTGGCGTGCCAATGTTAGAGCGAACTCCTGCTAAA
genomic: GCCCCTCGGACTTCCCGGTTTGCAACCTGCGAGCCGGACAGTGTCTCAAGgtaacttgct ... atgcttgcagGACAAGAGAAACCCGTTTGGCGTGCCAATGTTAGAGCGAACTCCTGCTAAA
EST: gi|37833799|gb|BJ591811.1|BJ591811
EST:     GCCCCTCGGACTTCCCGGTTTGCAACCTGCGAGCCGGACAGTGTCTCAAG                         GACAAGAGAAACCCGTTTGGCGTGCCAATGTTAGAGCGAACTCCTGCTAAA
genomic: GCCCCTCGGACTTCCCGGTTTGCAACCTGCGAGCCGGACAGTGTCTCAAGgtaacttgct ... atgcttgcagGACAAGAGAAACCCGTTTGGCGTGCCAATGTTAGAGCGAACTCCTGCTAAA
EST: gi|37840792|gb|BJ598800.1|BJ598800
EST:     GCCCCTCGGACTTCCCGGTTTGCAACCTGCGAGCCGGACAGTGTCTCAAG                         GACAAGAGAAACCCGTTTGGCGTGCCAATGTTAGAGCGAACTCCTGCTAAA
genomic: GCCCCTCGGACTTCCCGGTTTGCAACCTGCGAGCCGGACAGTGTCTCAAGgtaacttgct ... atgcttgcagGACAAGAGAAACCCGTTTGGCGTGCCAATGTTAGAGCGAACTCCTGCTAAA
EST: gi|67725212|gb|BJ975471.1|BJ975471
EST:     GCCCCTCGGACTTCCCGGTTTGCAACCTGCGAGCCGGACAGTGTCTCAAG                         GACAAGAGAAACCCGTTTGGCGTGCCAATGTTAGAGCGAACTCCTGCTAAA
genomic: GCCCCTCGGACTTCCCGGTTTGCAACCTGCGAGCCGGACAGTGTCTCAAGgtaacttgct ... atgcttgcagGACAAGAGAAACCCGTTTGGCGTGCCAATGTTAGAGCGAACTCCTGCTAAA
EST: gi|18338248|gb|BJ170272.1|BJ170272
EST:     GCCCCTCGGACTTCCCGGTTTGCAACCTGCGAGCCGGACAGTGTCTCAAG                         GACAAGAGAAACCCGTTTGGCGTGCCAATGTTAGAGCGAACTCCTGCTAAA
genomic: GCCCCTCGGACTTCCCGGTTTGCAACCTGCGAGCCGGACAGTGTCTCAAGgtaacttgct ... atgcttgcagGACAAGAGAAACCCGTTTGGCGTGCCAATGTTAGAGCGAACTCCTGCTAAA
EST: gi|37843795|gb|BJ601803.1|BJ601803
EST:     GCCCCTCGGACTTCCCGGTTTGCAACCTGCGAGCCGGACAGTGTCTCAAG                         GACAAGAGAAACCCGTTTGGCGTGCCAATGTTAGAGCGAACTCCTGCTAAA
genomic: GCCCCTCGGACTTCCCGGTTTGCAACCTGCGAGCCGGACAGTGTCTCAAGgtaacttgct ... atgcttgcagGACAAGAGAAACCCGTTTGGCGTGCCAATGTTAGAGCGAACTCCTGCTAAA
EST: gi|7147823|gb|AW509745.1|AW509745
EST:     GCCCCTCGGACTTCCCGGTTTGCAACCTGCGAGCCGGACAGTGTCTCAAG                         GACAAGAGAAACCCGTTTGGCGTGCCAATGTTAGAGCGAACTCCTGCTAAA
genomic: GCCCCTCGGACTTCCCGGTTTGCAACCTGCGAGCCGGACAGTGTCTCAAGgtaacttgct ... atgcttgcagGACAAGAGAAACCCGTTTGGCGTGCCAATGTTAGAGCGAACTCCTGCTAAA
EST: gi|37830474|gb|BJ588486.1|BJ588486
EST:     GCCCNTCGGACTTCCCGGTTTGCAACCTGCGAGCCGGACAGTGTCTCAAG                         GACAAGAGAAACCCGTTTGGCGTGCCAATGTTAGAGCGAACTCCTGCTAAA
genomic: GCCCCTCGGACTTCCCGGTTTGCAACCTGCGAGCCGGACAGTGTCTCAAGgtaacttgct ... atgcttgcagGACAAGAGAAACCCGTTTGGCGTGCCAATGTTAGAGCGAACTCCTGCTAAA
EST: gi|162186544|gb|FC363308.1|FC363308
EST:     GCCCCTCGGACTTCCCGGTTTGCAACCTGCGAGCCGGACAGTGTCTCAAG                         GACAAGAGAAACCCGTTTGGCGCGCCAATGTTAGAGCGAACTCCTGCTAAA
genomic: GCCCCTCGGACTTCCCGGTTTGCAACCTGCGAGCCGGACAGTGTCTCAAGgtaacttgct ... atgcttgcagGACAAGAGAAACCCGTTTGGCGTGCCAATGTTAGAGCGAACTCCTGCTAAA
EST: gi|37843532|gb|BJ601540.1|BJ601540
EST:     GCCCCTCGGACTTCCCGGTTTGCAACCTGCGAGCCGGACAGTGTCTCAAG                         GACAAGAGAAACCCGTTTGGCGTGCCAATGTTAGAGCGAACTCCTGCTAAA
genomic: GCCCCTCGGACTTCCCGGTTTGCAACCTGCGAGCCGGACAGTGTCTCAAGgtaacttgct ... atgcttgcagGACAAGAGAAACCCGTTTGGCGTGCCAATGTTAGAGCGAACTCCTGCTAAA
EST: gi|162149731|gb|FC326782.1|FC326782
EST:     GCCCCTCGGACTTCCCGGTTTGCAACCTGCGAGCCGGACAGTGTCTCAAG                         GACAAGAGAAACCCGTTTGGCGTGCCAATGTTAGAGCGAACTCCTGCTAAA
genomic: GCCCCTCGGACTTCCCGGTTTGCAACCTGCGAGCCGGACAGTGTCTCAAGgtaacttgct ... atgcttgcagGACAAGAGAAACCCGTTTGGCGTGCCAATGTTAGAGCGAACTCCTGCTAAA
EST: gi|18334362|gb|BJ166379.1|BJ166379
EST:     GCCCCTCGGACTTCCCGGTTTGCAACCTGCGAGCCGGACAGTGTCTCAAG                         GACAAGAGAAACCCGTTTGGCGTGCCAATGTTAGAGCGAACTCCTGCTAAA
genomic: GCCCCTCGGACTTCCCGGTTTGCAACCTGCGAGCCGGACAGTGTCTCAAGgtaacttgct ... atgcttgcagGACAAGAGAAACCCGTTTGGCGTGCCAATGTTAGAGCGAACTCCTGCTAAA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 33 (downstream exon)
Score: 55

CTGTTGCCCGATGGAATCCGCCACCTGCTGCGAGGATCACTACCATTGCTGCCCCTCGGACTTCCCGGTTTGCAACCTGCGAGCCGGACAGTGTCTCAAGgtaacttgct ... atgcttgcagGACAAGAGAAACCCGTTTGGCGTGCCAATGTTAGAGCGAACTCCTGCTAAATTCAACTGGCCCAAGTTCTCCTTCGAAGAGGAGAAAAAGGCTTCCTTTT




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taagttattgtaatggttgtaaacgaactgagtatcttggttgacatgcttgcagGACAAGAGAAACCCGTTTGGCGTGCCAATGTTAGAGCGAACTCCTGCTAAATTCAACTGGCCCAAGTTCTCCTTCGAAGAGGAGAAAAAGGCTTCCTTTT
                                      ggttgac  putative branch site (score: 55)
     tattgtaat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgtttgttcctctagttttcttgtattttgtgaaaattgaagtctaagttattgtaatggttgtaaacgaactgagtatcttggttgacatgcttgcagGACAAGAGAAACCCGTTTGGCGTGCCAATGTTAGAGCGAACTCCTGCTAAATTCAACTGGCCCAAGTTCTCCTTCGAAGAGGAGAAAAAGGCTTCCTTTT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGGA
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