1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...atgcaacccttgttttcaggatggtatatagactcttctagtgttgcgtcgtgtgtgacttggtaactcctcacacgccattagtggcgctcttccgcagAGTTGGACTTCAGATTTCCAGTGGGAGCACCTCTGCACGGCATAAAAGCGTTTGTCACCACAAATCAGCTTGAA
species | Physcomitrella patens |
transcript | PP1S277_10V6.3 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ACTCAAGGATCACACTCACACTTTTATTAACAAAGGCGGCAACGTTGGAG AGTTGGACTTCAGATTTCCAGTGGGAGCACCTCTGCACGGCATAAEST: gi|162165520|gb|FC340631.1|FC340631
genomic: ACTCAAGGATCACACTCACACTTTTATTAACAAAGGCGGCAACGTTGGAGgttagttatt ... tcttccgcagAGTTGGACTTCAGATTTCCAGTGGGAGCACCTCTGCACGGCATAA
EST: ACTCAAGGATCACACTCACACTTTTATTAACAAAGGCGGCAACGTTGGAG AGTTGGACTTCAGATTTCCAGTGGGAGCACCTCTGCACGGCATAAAAGCGTEST: gi|100447940|gb|CJ972239.1|CJ972239
genomic: ACTCAAGGATCACACTCACACTTTTATTAACAAAGGCGGCAACGTTGGAGgttagttatt ... tcttccgcagAGTTGGACTTCAGATTTCCAGTGGGAGCACCTCTGCACGGCATAAAAGCGT
EST: ACTCAAGGATCACACTCACACTTTTATTAACAAAGGCGGCAACGTTGGAG AGTTGGACTTCAGATTTCCAGTGGGAGCACCTCTGCACGGCATAAAAGCGTEST: gi|162155413|gb|FC332027.1|FC332027
genomic: ACTCAAGGATCACACTCACACTTTTATTAACAAAGGCGGCAACGTTGGAGgttagttatt ... tcttccgcagAGTTGGACTTCAGATTTCCAGTGGGAGCACCTCTGCACGGCATAAAAGCGT
EST: ACTCAAGGATCACACTCACACTTTTATTAACAAAGGCGGCAACGTTGGAG AGTTGGACTTCAGATTTCCAGTGGGAGCACCTCTGCACGGCATAAAAGCGTEST: gi|18327722|gb|BJ159725.1|BJ159725
genomic: ACTCAAGGATCACACTCACACTTTTATTAACAAAGGCGGCAACGTTGGAGgttagttatt ... tcttccgcagAGTTGGACTTCAGATTTCCAGTGGGAGCACCTCTGCACGGCATAAAAGCGT
EST: ACTCAAGGATCACACTCACACTTTTATTAACAAAGGCGGCAACGTTGGAG AGTTGGACTTCAGATTTCCAGTGGGAGCACCTCTGCACGGCATAAAAGCGTEST: gi|100396902|gb|BY953885.1|BY953885
genomic: ACTCAAGGATCACACTCACACTTTTATTAACAAAGGCGGCAACGTTGGAGgttagttatt ... tcttccgcagAGTTGGACTTCAGATTTCCAGTGGGAGCACCTCTGCACGGCATAAAAGCGT
EST: CTCAAGGATCACACTCACACTTTTATTAACAAAGGCGGCAACGTTTGGAG AGGTGGACTTCAGATTTCCAGTGGGAGCACCTCTGCACGGCATAAAAGCGEST: gi|208399548|gb|DC908545.1|DC908545
genomic: CTCAAGGATCACACTCACACTTTTATTAACAAAGGCGGCAACGTT-GGAGgttagttatt ... tcttccgcagAGTTGGACTTCAGATTTCCAGTGGGAGCACCTCTGCACGGCATAAAAGCG
EST: ACTCAAGGATCACACTCACACTTTTATTAACAAAGGCGGCAACGTTGGAG AGTTGGACTTCAGATTTCCAGTGGGAGCACCTCTGCACGGCATAAAAGCGTEST: gi|162151154|gb|FC327153.1|FC327153
genomic: ACTCAAGGATCACACTCACACTTTTATTAACAAAGGCGGCAACGTTGGAGgttagttatt ... tcttccgcagAGTTGGACTTCAGATTTCCAGTGGGAGCACCTCTGCACGGCATAAAAGCGT
EST: ACTCAAGGATCACACTCACACTTTTATTAACAAAGGCGGCAACGTTGGAG AGTTGGACTTCAGATTTCCAGTGGGAGCACCTCTGCACGGCATAAAAGCGTEST: gi|162198693|gb|FC373474.1|FC373474
genomic: ACTCAAGGATCACACTCACACTTTTATTAACAAAGGCGGCAACGTTGGAGgttagttatt ... tcttccgcagAGTTGGACTTCAGATTTCCAGTGGGAGCACCTCTGCACGGCATAAAAGCGT
EST: ACTCAAGGATCACACTCACACTTTTATTAACAAAGGCGGCAACGTTGGAG AGTTGGACTTCAGATTTCCAGTGGGAGCACCTCTGCACGGCATAAAAGCGTEST: gi|100423760|gb|BY976531.1|BY976531
genomic: ACTCAAGGATCACACTCACACTTTTATTAACAAAGGCGGCAACGTTGGAGgttagttatt ... tcttccgcagAGTTGGACTTCAGATTTCCAGTGGGAGCACCTCTGCACGGCATAAAAGCGT
EST: CTCAAGGATCACACTCACACTTTTTATTAACAAAAGCGGCAACGTTGGAG AGTTGGACCTTCAGATTTCCCGTGTGGAGAACCTCTTGCACGGGTATAAAAEST: gi|208351706|gb|DC910066.1|DC910066
genomic: CTCAAGGATCACACTCACACTTTT-ATTAACAAAGGCGGCAACGTTGGAGgttagttatt ... tcttccgcagAGTTGGAC-TTCAGATTTCCAGTG-GGAGCACCTCT-GCACGGC-ATAAAA
EST: ACTCAAGGATCACACTCACACTTTTATTAACAAAGGCGGCAACGTTGGAG AGTTGGACTTCAGATTTCCAGTGGGAGCACCTCTGCACGGCATAAAAGTGTEST: gi|100367017|gb|BY948326.1|BY948326
genomic: ACTCAAGGATCACACTCACACTTTTATTAACAAAGGCGGCAACGTTGGAGgttagttatt ... tcttccgcagAGTTGGACTTCAGATTTCCAGTGGGAGCACCTCTGCACGGCATAAAAGCGT
EST: ACTCAAGGATCACACTCACACTTTTATTAACAAAGGCGGCAACGTTGGAG AGTTGGACTTCAGATTTCCAGTGGGAGCACCTCTGCACGGCATAAAAGCGTEST: gi|162167140|gb|FC343616.1|FC343616
genomic: ACTCAAGGATCACACTCACACTTTTATTAACAAAGGCGGCAACGTTGGAGgttagttatt ... tcttccgcagAGTTGGACTTCAGATTTCCAGTGGGAGCACCTCTGCACGGCATAAAAGCGT
EST: ACTCAAGGATCACACTCACACTTTTATTAACAAAGGCGGCAACGTTGGAG AGTTGGACTTCAGATTTCCAGTGGGAGCACCTCTGCACGGCATAAAAGCGTEST: gi|162159709|gb|FC336095.1|FC336095
genomic: ACTCAAGGATCACACTCACACTTTTATTAACAAAGGCGGCAACGTTGGAGgttagttatt ... tcttccgcagAGTTGGACTTCAGATTTCCAGTGGGAGCACCTCTGCACGGCATAAAAGCGT
EST: ACTCAAGGATCACACTCACACTTTTATTAACAAAGGCGGCAACGTTGGAG AGTTGGACTTCAGATTTCCAGTGGGAGCACCTCTGCACGGCATAAAAGCGTEST: gi|162167477|gb|FC344194.1|FC344194
genomic: ACTCAAGGATCACACTCACACTTTTATTAACAAAGGCGGCAACGTTGGAGgttagttatt ... tcttccgcagAGTTGGACTTCAGATTTCCAGTGGGAGCACCTCTGCACGGCATAAAAGCGT
EST: ACTCAAGGATCACACTCACACTTTTATTAACAAAGGCGGCAACGTTGGAG AGTTGGACTTCAGATTTCCAGTGGGAGCACCTCTGCACGGCATAAAAGCGTEST: gi|208349541|gb|DC905651.1|DC905651
genomic: ACTCAAGGATCACACTCACACTTTTATTAACAAAGGCGGCAACGTTGGAGgttagttatt ... tcttccgcagAGTTGGACTTCAGATTTCCAGTGGGAGCACCTCTGCACGGCATAAAAGCGT
EST: ACTCAAGGATCACACTCACACTTTTATTAACAAAGGCGGCAACGTTGGAG AGTTGGACTTCAGATTTCCAGTGGGAGCACCTCTGCACGGCATAAAAGCGTEST: gi|100390582|gb|BY971337.1|BY971337
genomic: ACTCAAGGATCACACTCACACTTTTATTAACAAAGGCGGCAACGTTGGAGgttagttatt ... tcttccgcagAGTTGGACTTCAGATTTCCAGTGGGAGCACCTCTGCACGGCATAAAAGCGT
EST: TCAAGGATCACACTCACACTTTTTATTAACAAAGGCGGCAAACGTTGGAG AGCTGGACTTCAGATTTCCAGGGGGAGCACEST: gi|100387464|gb|BY988335.1|BY988335
genomic: TCAAGGATCACACTCACACTTTT-ATTAACAAAGGCGGCAA-CGTTGGAGgttagttatt ... tcttccgcagAGTTGGACTTCAGATTTCCAGTGGGAGCAC
EST: ACTCAGGGATCACACTCACACTTTTATTAACAAAGGCGGCAACGTTGGAG AGTTGGACTTCAGATTTCCAGTGGGAGCACCTCTEST: gi|208397089|gb|DC908103.1|DC908103
genomic: ACTCAAGGATCACACTCACACTTTTATTAACAAAGGCGGCAACGTTGGAGgttagttatt ... tcttccgcagAGTTGGACTTCAGATTTCCAGTGGGAGCACCTCT
EST: ACTCAAGGATCACACTCACACTTTTATTAACAAAGGCGGCAACGTTGGAG AGTTGGACTTCAGATTTCCAGTGGGAGCACCTCTGCACGGCATAAA-GCGTEST: gi|162168664|gb|FC343926.1|FC343926
genomic: ACTCAAGGATCACACTCACACTTTTATTAACAAAGGCGGCAACGTTGGAGgttagttatt ... tcttccgcagAGTTGGACTTCAGATTTCCAGTGGGAGCACCTCTGCACGGCATAAAAGCGT
EST: ACTCAAGGATCACACTCACACTTTTATTAACAAAGGCGGCAACGTTGGAG AGTTGGACTTCAGATTTCCAGTGGGAGCACCTCTGCACGGCATAAAAGCGTEST: gi|162170376|gb|FC346781.1|FC346781
genomic: ACTCAAGGATCACACTCACACTTTTATTAACAAAGGCGGCAACGTTGGAGgttagttatt ... tcttccgcagAGTTGGACTTCAGATTTCCAGTGGGAGCACCTCTGCACGGCATAAAAGCGT
EST: ACTCAAGGATCACACTCACACTTTTATTAACAAAGGCGGCAACGTTGGAG AGTTGGACTTCAGATTTCCAGTGGGAGCACCTCTGCACGGCATAAAAGCGTEST: gi|162176795|gb|FC352809.1|FC352809
genomic: ACTCAAGGATCACACTCACACTTTTATTAACAAAGGCGGCAACGTTGGAGgttagttatt ... tcttccgcagAGTTGGACTTCAGATTTCCAGTGGGAGCACCTCTGCACGGCATAAAAGCGT
EST: ACTCAAGGATCACACTCACACTTTTATTAACAAAGGCGGCAACGTTGGAG AGTTGGACTTCAGATTTCCAGTGGGAGCACCTCTGCACGGCATAAAAGCGTEST: gi|162267926|gb|FC444007.1|FC444007
genomic: ACTCAAGGATCACACTCACACTTTTATTAACAAAGGCGGCAACGTTGGAGgttagttatt ... tcttccgcagAGTTGGACTTCAGATTTCCAGTGGGAGCACCTCTGCACGGCATAAAAGCGT
EST: ACTCAAGGATCACACTCACACTTTTATTAACAAAGGCGGCAACGTTGGAG AGTTGGACTTCAGATTTCCAGTGGGAGCACCTCTGCACGGCATAAAAGCGTEST: gi|100450706|gb|CJ974398.1|CJ974398
genomic: ACTCAAGGATCACACTCACACTTTTATTAACAAAGGCGGCAACGTTGGAGgttagttatt ... tcttccgcagAGTTGGACTTCAGATTTCCAGTGGGAGCACCTCTGCACGGCATAAAAGCGT
EST: CTCAAGGATCACACTCACACTTTTTATTAACAAAGGCGGCAACGTTGGAG AGTTGGACTNCAAATT-CCAGTGGGAGCACCTCTGCACGNCATAAAAGCGTEST: gi|100443101|gb|BY981727.1|BY981727
genomic: CTCAAGGATCACACTCACACTTTT-ATTAACAAAGGCGGCAACGTTGGAGgttagttatt ... tcttccgcagAGTTGGACTTCAGATTTCCAGTGGGAGCACCTCTGCACGGCATAAAAGCGT
EST: CTNCA-GGATCACACTCACACTTTTATTAACAAAGGCNGCAACGGTGGAG AGTTGGACTTCAGATTTCCAGTGGGAGCACCTCTGCACGGCATAAAAGCEST: gi|162166539|gb|FC343236.1|FC343236
genomic: CT-CAAGGATCACACTCACACTTTTATTAACAAAGGCGGCAACGTTGGAGgttagttatt ... tcttccgcagAGTTGGACTTCAGATTTCCAGTGGGAGCACCTCTGCACGGCATAAAAGC
EST: ACTCAAGGATCACACTCACACTTTTATTAACAAAGGCGGCAACGTTGGAG AGTTGGACTTCAGATTTCCAGTGGGAGCACCTCTGCACGGCATAAAAGCGT
genomic: ACTCAAGGATCACACTCACACTTTTATTAACAAAGGCGGCAACGTTGGAGgttagttatt ... tcttccgcagAGTTGGACTTCAGATTTCCAGTGGGAGCACCTCTGCACGGCATAAAAGCGT
gcgtcgtgtgtgacttggtaactcctcacacgccattagtggcgctcttccgcagAGTTGGACTTCAGATTTCCAGTGGGAGCACCTCTGCACGGCATAAAAGCGTTTGTCACCACAAATCAGCTTGAA
tcctcac putative branch site (score: 17)
cgctcttcc putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgcaacccttgttttcaggatggtatatagactcttctagtgttgcgtcgtgtgtgacttggtaactcctcacacgccattagtggcgctcttccgcagAGTTGGACTTCAGATTTCCAGTGGGAGCACCTCTGCACGGCATAAAAGCGTTTGTCACCACAAATCAGCTTGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT