1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaagtaaatctcatcttaagagcatagttcgaatgttggtttctatgtacatacagtcagaagttcacaaatgtaatgacgctgtactgcaacgtgtctggcttgatgctgtcacagcctgtaaaattgctggaaacggataatcccactaatatatgtttcaactggcgatctgcagTATGTCTGCCATTGGTTACTACTGCTCTGTAGAGAAGGTGAAAGGCAAAGAAGGCGAGGATAGAGTTGTTATCATTATGAACGGAAAGTTCTTGCCCCAC
species | Physcomitrella patens |
transcript | PP1S272_13V6.5 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TACGGCGAAAGCATCAAGGATATCATCAATGAAGAGTTTGGTGACGGCAT TATGTCTGCCATTGGTTACTACTGCTCTGTAGAGAAGGTGAAAGGCAAAGAEST: gi|162239982|gb|FC418785.1|FC418785
genomic: TACGGCGAAAGCATCAAGGATATCATCAATGAAGAGTTTGGTGACGGCATgtaagtaaat ... cgatctgcagTATGTCTGCCATTGGTTACTACTGCTCTGTAGAGAAGGTGAAAGGCAAAGA
EST: TACGGCGAAAGCATCAAGGATATCATCAATGAAGAGTTTGGTGACGGCAT TATGTCTGCCATTGGTTACTACTGCTCTGTAGAGAAGGTGAAAGGCAAAGAEST: gi|67697134|gb|BJ957367.1|BJ957367
genomic: TACGGCGAAAGCATCAAGGATATCATCAATGAAGAGTTTGGTGACGGCATgtaagtaaat ... cgatctgcagTATGTCTGCCATTGGTTACTACTGCTCTGTAGAGAAGGTGAAAGGCAAAGA
EST: TACGGCGAAAGCATCAAGGATATCATCAATGAAGAGTTTGGTGACGGCAT TATGTCTGCCATTGGTTACTACTGCTCTGTAGAGAAGGTGAAAGGCAAAGAEST: gi|67701145|gb|BJ961378.1|BJ961378
genomic: TACGGCGAAAGCATCAAGGATATCATCAATGAAGAGTTTGGTGACGGCATgtaagtaaat ... cgatctgcagTATGTCTGCCATTGGTTACTACTGCTCTGTAGAGAAGGTGAAAGGCAAAGA
EST: TACGGCGAAAGCATCAAGGATATCATCAATGAAGAGTTTGGTGACGGCAT TATGTCTGCCATTGGTTACTACTGCTCTGTAGAGAAGGTGAAAGGCAAAGAEST: gi|67573748|gb|BJ946572.1|BJ946572
genomic: TACGGCGAAAGCATCAAGGATATCATCAATGAAGAGTTTGGTGACGGCATgtaagtaaat ... cgatctgcagTATGTCTGCCATTGGTTACTACTGCTCTGTAGAGAAGGTGAAAGGCAAAGA
EST: TACGGCGAAAGCATCAAGGATATCATCAATGAAGAGTTTGGTGACGGCAT TATGTCTGCCATTGGTTACTACTGCTCTGTAGAGAAGGTGAAAGGCAAAGAEST: gi|67693986|gb|BJ954219.1|BJ954219
genomic: TACGGCGAAAGCATCAAGGATATCATCAATGAAGAGTTTGGTGACGGCATgtaagtaaat ... cgatctgcagTATGTCTGCCATTGGTTACTACTGCTCTGTAGAGAAGGTGAAAGGCAAAGA
EST: TACGGCGAAAGCATCAAGGATATCATCAATGAAGAGTTTGGTGACGGCAT TATGTCTGCCATTGGTTACTACTGCTCTGTAGAGAAGGTGAAAGGCAAAGAEST: gi|67700516|gb|BJ960749.1|BJ960749
genomic: TACGGCGAAAGCATCAAGGATATCATCAATGAAGAGTTTGGTGACGGCATgtaagtaaat ... cgatctgcagTATGTCTGCCATTGGTTACTACTGCTCTGTAGAGAAGGTGAAAGGCAAAGA
EST: TACGGCGAAAGCATCAAGGATATCATCAATGAAGAGTTTGGTGACGGCAT TATGTCTGCCATTGGTTACTACTGCTCTGTAGAGAAGGTGAAAGGCAAAGAEST: gi|67692354|gb|BJ952587.1|BJ952587
genomic: TACGGCGAAAGCATCAAGGATATCATCAATGAAGAGTTTGGTGACGGCATgtaagtaaat ... cgatctgcagTATGTCTGCCATTGGTTACTACTGCTCTGTAGAGAAGGTGAAAGGCAAAGA
EST: TACGGCGAAAGCATCAAGGATATCATCAATGAAGAGTTTGGTGACGGCAT TATGTCTGCCATTGGTTACTACTGCTCTGTAGAGAAGGTGAAAGGCAAAGAEST: gi|18361453|gb|BJ193519.1|BJ193519
genomic: TACGGCGAAAGCATCAAGGATATCATCAATGAAGAGTTTGGTGACGGCATgtaagtaaat ... cgatctgcagTATGTCTGCCATTGGTTACTACTGCTCTGTAGAGAAGGTGAAAGGCAAAGA
EST: TACGGCGAAAGCATCAAGGATATCATCAATGAAGAGTTTGGTGACGGCAT TATGTCTGCCATTGGTTACTACTGCTCTGTAGAGAAGGTGAAAGGCAAAGAEST: gi|162239983|gb|FC418786.1|FC418786
genomic: TACGGCGAAAGCATCAAGGATATCATCAATGAAGAGTTTGGTGACGGCATgtaagtaaat ... cgatctgcagTATGTCTGCCATTGGTTACTACTGCTCTGTAGAGAAGGTGAAAGGCAAAGA
EST: TACGGCGAAAGCATCAAGGATATCATCAATGAAGAGTTTGGTGACGGCAT TATGTCTGCCATTGGTTACTACTGCTCTGTAGAGAAGGTGAAAGGCAAAGAEST: gi|67701515|gb|BJ961748.1|BJ961748
genomic: TACGGCGAAAGCATCAAGGATATCATCAATGAAGAGTTTGGTGACGGCATgtaagtaaat ... cgatctgcagTATGTCTGCCATTGGTTACTACTGCTCTGTAGAGAAGGTGAAAGGCAAAGA
EST: TACGGCGAAAGCATCAAGGATATCATCAATGAAGAGTTTGGTGACGGCAT TATGTCTGCCATTGGTTACTACTGCTCTGTAGAGAAGGTGAAAGGCAAAGAEST: gi|37842305|gb|BJ600313.1|BJ600313
genomic: TACGGCGAAAGCATCAAGGATATCATCAATGAAGAGTTTGGTGACGGCATgtaagtaaat ... cgatctgcagTATGTCTGCCATTGGTTACTACTGCTCTGTAGAGAAGGTGAAAGGCAAAGA
EST: TACGGCGAAAGCATCAAGGATATCATCAATGAAGAGTTTGGTGACGGCAT TATGTCTGCCATTGGTTACTACTGCTCTGTAGAGAAGGTGAAAGGCAAAGAEST: gi|162219374|gb|FC396904.1|FC396904
genomic: TACGGCGAAAGCATCAAGGATATCATCAATGAAGAGTTTGGTGACGGCATgtaagtaaat ... cgatctgcagTATGTCTGCCATTGGTTACTACTGCTCTGTAGAGAAGGTGAAAGGCAAAGA
EST: TACGGCGAAAGCATCAAGGATATCATCAATGAAGAGTTTGGTGACGGCAT TATGTCTGCCATTGGTTACTACTGCTCTGTAGAGAAGGTGAAAGGCAAAGAEST: gi|67508506|gb|BJ941371.1|BJ941371
genomic: TACGGCGAAAGCATCAAGGATATCATCAATGAAGAGTTTGGTGACGGCATgtaagtaaat ... cgatctgcagTATGTCTGCCATTGGTTACTACTGCTCTGTAGAGAAGGTGAAAGGCAAAGA
EST: TACGGCGAAAGCATCAAGGATATCATCAATGAAGAGTTTGGTGACGGCAT TATGTCTGCCATTGGTTACTACTGCTCTGTAGAGAAGGTGAAAGGCAAAGAEST: gi|208395581|gb|DC928996.1|DC928996
genomic: TACGGCGAAAGCATCAAGGATATCATCAATGAAGAGTTTGGTGACGGCATgtaagtaaat ... cgatctgcagTATGTCTGCCATTGGTTACTACTGCTCTGTAGAGAAGGTGAAAGGCAAAGA
EST: TACGGCGAAAGCATCAAGGATATCATCAATGAAGAGTTTGGTGACGGCAT TATGTCTGCCATTGGTTACTACTGCTCTGTAGAGAAGGTGAAAGGCAAAGAEST: gi|67693480|gb|BJ953713.1|BJ953713
genomic: TACGGCGAAAGCATCAAGGATATCATCAATGAAGAGTTTGGTGACGGCATgtaagtaaat ... cgatctgcagTATGTCTGCCATTGGTTACTACTGCTCTGTAGAGAAGGTGAAAGGCAAAGA
EST: TACGGCGAAAGCATCAAGGATATCATCAATGAAGAGTTTGGTGACGGCAT TATGTCTGCCATTGGTTACTACTGCTCTGTAGAGAAGGTGAAAGGCAAAGAEST: gi|162222811|gb|FC399065.1|FC399065
genomic: TACGGCGAAAGCATCAAGGATATCATCAATGAAGAGTTTGGTGACGGCATgtaagtaaat ... cgatctgcagTATGTCTGCCATTGGTTACTACTGCTCTGTAGAGAAGGTGAAAGGCAAAGA
EST: TACGGCGAAAGCATCAAGGATATCATCAATGAAGAGTTTGGTGACGGCAT TATGTCTGCCATTGGTTACTACTGCTCTGTAGAGAAGGTGAAAGGCAAAGAEST: gi|67569108|gb|BJ941932.1|BJ941932
genomic: TACGGCGAAAGCATCAAGGATATCATCAATGAAGAGTTTGGTGACGGCATgtaagtaaat ... cgatctgcagTATGTCTGCCATTGGTTACTACTGCTCTGTAGAGAAGGTGAAAGGCAAAGA
EST: TACGGCGAAAGCATCAAGGATATCATCAATGAAGAGTTTGGTGACGGCAT TATGTCTGCCATTGGTTACTACTGCTCTGTAGAGAAGGTGAAAGGCAAAGAEST: gi|162162852|gb|FC338101.1|FC338101
genomic: TACGGCGAAAGCATCAAGGATATCATCAATGAAGAGTTTGGTGACGGCATgtaagtaaat ... cgatctgcagTATGTCTGCCATTGGTTACTACTGCTCTGTAGAGAAGGTGAAAGGCAAAGA
EST: TACGGCGAAAGCATCAAGGATATCATCAATGAAGAGTTTGGTGACGGCAT TATGTCTGCCATTGGTTACTACTGCTCTGTAGAGAAGGTGAAAGGCAAAGAEST: gi|67700294|gb|BJ960527.1|BJ960527
genomic: TACGGCGAAAGCATCAAGGATATCATCAATGAAGAGTTTGGTGACGGCATgtaagtaaat ... cgatctgcagTATGTCTGCCATTGGTTACTACTGCTCTGTAGAGAAGGTGAAAGGCAAAGA
EST: ACNGCGAAANGCATCAAGGATATCATCAATGAAGAGTTTGGTGACGGCAT TATGTCTGCCATTGGTTACTACTGCTCTGTAGAGAAGGTGAAAGGCAAAGAEST: gi|37850310|gb|BJ608318.1|BJ608318
genomic: ACGGCGAAA-GCATCAAGGATATCATCAATGAAGAGTTTGGTGACGGCATgtaagtaaat ... cgatctgcagTATGTCTGCCATTGGTTACTACTGCTCTGTAGAGAAGGTGAAAGGCAAAGA
EST: TACGGCGAAAGCATCAAGGATATCATCAATGAAGAGTTTGGTGACGGCAT TATGTCTGCCATTGGTTACTACTGCTCTGTAGAGAAGGTGAAAGGCAAAGAEST: gi|162246985|gb|FC424785.1|FC424785
genomic: TACGGCGAAAGCATCAAGGATATCATCAATGAAGAGTTTGGTGACGGCATgtaagtaaat ... cgatctgcagTATGTCTGCCATTGGTTACTACTGCTCTGTAGAGAAGGTGAAAGGCAAAGA
EST: TACGGCGAAAGCATCAAGGATATCATCAATGAAGAGTTTGGTGACGGCAT TATGTCTGCCATTGGTTACTACTGCTCTGTAGAGAAGGTGAAAGGCAAAGAEST: gi|18366564|gb|BJ198643.1|BJ198643
genomic: TACGGCGAAAGCATCAAGGATATCATCAATGAAGAGTTTGGTGACGGCATgtaagtaaat ... cgatctgcagTATGTCTGCCATTGGTTACTACTGCTCTGTAGAGAAGGTGAAAGGCAAAGA
EST: TACGGCGAAAGCATCAAGGATATCATCAATGAAGAGTTTGGTGACGGCAT TATGTCTGCCATTGGTTACTACTGCTCTGTAGAGAEST: gi|37849018|gb|BJ607026.1|BJ607026
genomic: TACGGCGAAAGCATCAAGGATATCATCAATGAAGAGTTTGGTGACGGCATgtaagtaaat ... cgatctgcagTATGTCTGCCATTGGTTACTACTGCTCTGTAGAGA
EST: TACGGCGAAAGCATCAAGGATATCATCAATGAAGAGTTTGGTGACGGCAT TATGTCTGCCATTGGTTACTACTGCTCTGTAGAGAAGGTGAAAGGCAAAGAEST: gi|208367515|gb|DC955695.1|DC955695
genomic: TACGGCGAAAGCATCAAGGATATCATCAATGAAGAGTTTGGTGACGGCATgtaagtaaat ... cgatctgcagTATGTCTGCCATTGGTTACTACTGCTCTGTAGAGAAGGTGAAAGGCAAAGA
EST: TACGGCGAAAGCATCAAGGATATCATCAATGAAGAGTTTGGTGACGGCAT TATGTCTGCCATTGGTTACTACTGCTCTGTAGAGAAGGTGAAAGGCAAAGAEST: gi|162205229|gb|FC380911.1|FC380911
genomic: TACGGCGAAAGCATCAAGGATATCATCAATGAAGAGTTTGGTGACGGCATgtaagtaaat ... cgatctgcagTATGTCTGCCATTGGTTACTACTGCTCTGTAGAGAAGGTGAAAGGCAAAGA
EST: TACGGCGAAAGCATCAAGGATATCATCAATGAAGAGTTTGGTGACGGCAT TATGTCTGCCATTGGTTACTACTGCTCTGTAGAGAAGGTGAAAGGCAAAGAEST: gi|37846944|gb|BJ604952.1|BJ604952
genomic: TACGGCGAAAGCATCAAGGATATCATCAATGAAGAGTTTGGTGACGGCATgtaagtaaat ... cgatctgcagTATGTCTGCCATTGGTTACTACTGCTCTGTAGAGAAGGTGAAAGGCAAAGA
EST: TACGGCGAAAGCATCAAGGATATCATCAATGAAGAGTTTGGTGACGGCAT TATGTCTGCCATTGGTTACTACTGCTCTGTAGAGAAGGTGAAAGGCAAAGAEST: gi|162161409|gb|FC337615.1|FC337615
genomic: TACGGCGAAAGCATCAAGGATATCATCAATGAAGAGTTTGGTGACGGCATgtaagtaaat ... cgatctgcagTATGTCTGCCATTGGTTACTACTGCTCTGTAGAGAAGGTGAAAGGCAAAGA
EST: TACGGCGAAAGCATCAAGGATATCATCAATGAAGAGTTTGGTGACGGCAT TATGTCTGCCATTGGTTACTACTGCTCTGTAGAGAAGGTGAAAGGCAAAGAEST: gi|67692348|gb|BJ952581.1|BJ952581
genomic: TACGGCGAAAGCATCAAGGATATCATCAATGAAGAGTTTGGTGACGGCATgtaagtaaat ... cgatctgcagTATGTCTGCCATTGGTTACTACTGCTCTGTAGAGAAGGTGAAAGGCAAAGA
EST: TACGGCGAAAGCATCAAGGATATCATCAATGAAGAGTTTGGTGACGGCAT TATGTCTGCCATTGGTTACTACTGCTCTGTAGAGAAGGTGAAAGGCAAAGAEST: gi|162247194|gb|FC420236.1|FC420236
genomic: TACGGCGAAAGCATCAAGGATATCATCAATGAAGAGTTTGGTGACGGCATgtaagtaaat ... cgatctgcagTATGTCTGCCATTGGTTACTACTGCTCTGTAGAGAAGGTGAAAGGCAAAGA
EST: TACGGCGAAAGCATCAAGGATATCATCAATGAAGAGTTTGGTGACGGCAT TATGTCTGCCATTGGTTACTACTGCTCTGTAGAGAAGGTGAAAGGCAAAGA
genomic: TACGGCGAAAGCATCAAGGATATCATCAATGAAGAGTTTGGTGACGGCATgtaagtaaat ... cgatctgcagTATGTCTGCCATTGGTTACTACTGCTCTGTAGAGAAGGTGAAAGGCAAAGA
aaattgctggaaacggataatcccactaatatatgtttcaactggcgatctgcagTATGTCTGCCATTGGTTACTACTGCTCTGTAGAGAAGGTGAAAGGCAAAGAAGGCGAGGATAGAGTTGTTATCATTATGAACGGAAAGTTCTTGCCCCAC
cactaat putative branch site (score: 2)
taatatatgtttcaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtaaatctcatcttaagagcatagttcgaatgttggtttctatgtacatacagtcagaagttcacaaatgtaatgacgctgtactgcaacgtgtctggcttgatgctgtcacagcctgtaaaattgctggaaacggataatcccactaatatatgtttcaactggcgatctgcagTATGTCTGCCATTGGTTACTACTGCTCTGTAGAGAAGGTGAAAGGCAAAGAAGGCGAGGATAGAGTTGTTATCATTATGAACGGAAAGTTCTTGCCCCAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT