1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gttattaactccccgtctacattttctggttgcaatgttgatttgaatgaacaatttctctaagttatgacgcagactgctgaatgcgtttatatgccgtttttttttgggaaattggcgcagACCGTACTGGCGATGCTATTATCCAAACACACAAGCAATCATCTACGTGGTAGATTCAAGTGATACAGATCGCATGTCCATAGCTCAAGAAGAGTTTCAT
species | Physcomitrella patens |
transcript | PP1S271_49V6.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ATTTAGGGGGTCAAACGAGTATCAG ACCGTACTGGCGATGCTATTATCCAAACACACAAGCAATCATCTACGTGGTEST: gi|208374444|gb|DC940717.1|DC940717
genomic: ATTTAGGGGGTCAAACGAGTATCAGgttattaact ... attggcgcagACCGTACTGGCGATGCTATTATCCAAACACACAAGCAATCATCTACGTGGT
EST: ATTTAGGGGGTCAAACGAGTATCAG ACCGTACTGGCGATGCTATTATCCAAACACACAAGCAATCATCTACGTGGTEST: gi|162240378|gb|FC419311.1|FC419311
genomic: ATTTAGGGGGTCAAACGAGTATCAGgttattaact ... attggcgcagACCGTACTGGCGATGCTATTATCCAAACACACAAGCAATCATCTACGTGGT
EST: ATTTAGGGGGTCAAACGAGTATCAG ACCGTACTGGCGATGCTATTATCCAAACACACAAGCAATCATCTACGTGGTEST: gi|208392443|gb|DC907920.1|DC907920
genomic: ATTTAGGGGGTCAAACGAGTATCAGgttattaact ... attggcgcagACCGTACTGGCGATGCTATTATCCAAACACACAAGCAATCATCTACGTGGT
EST: ATTTAGGGGGTCAAACGAGTATCAG ACCGTACTGGCGATGCTATTATCCAAACACACAAGCAATCATCTACGTGGTEST: gi|67569908|gb|BJ942732.1|BJ942732
genomic: ATTTAGGGGGTCAAACGAGTATCAGgttattaact ... attggcgcagACCGTACTGGCGATGCTATTATCCAAACACACAAGCAATCATCTACGTGGT
EST: ATTTAGGGGGTCAAACGAGTATCAG ACCGTACTGGCGATGCTATTATCCAAACAC
genomic: ATTTAGGGGGTCAAACGAGTATCAGgttattaact ... attggcgcagACCGTACTGGCGATGCTATTATCCAAACAC
gacgcagactgctgaatgcgtttatatgccgtttttttttgggaaattggcgcagACCGTACTGGCGATGCTATTATCCAAACACACAAGCAATCATCTACGTGGTAGATTCAAGTGATACAGATCGCATGTCCATAGCTCAAGAAGAGTTTCAT
ttttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttattaactccccgtctacattttctggttgcaatgttgatttgaatgaacaatttctctaagttatgacgcagactgctgaatgcgtttatatgccgtttttttttgggaaattggcgcagACCGTACTGGCGATGCTATTATCCAAACACACAAGCAATCATCTACGTGGTAGATTCAAGTGATACAGATCGCATGTCCATAGCTCAAGAAGAGTTTCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG